Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1330 428 6e-115 seq3144 188 1e-42 seq453 105 9e-18 >seq1330 Length=20794 Score = 428 bits (474), Expect = 6e-115 Identities = 697/989 (70%), Gaps = 16/989 (2%) Strand=Plus/Plus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA-CACATCAATG 69574 ||| |||||||| ||||||||||| || |||||| |||| ||| || || || Sbjct 17082 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 17141 Query 69575 ACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAA 69634 ||| ||||| | ||| | ||||||||| ||||| | || |||||| || || Sbjct 17142 -CCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAA 17200 Query 69635 AGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCA 69694 | | ||| | | | | |||||| ||||| ||||||||||| | ||| | ||| || | Sbjct 17201 ATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAA 17260 Query 69695 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTC 69754 ||| |||| |||||| | ||||| ||| || || | | ||||| ||||| ||||||| Sbjct 17261 AAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTC 17320 Query 69755 CCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAG 69814 | ||||| | ||||| ||||| |||||||| || | | ||| |||||||| ||||| | Sbjct 17321 CTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCATTTG 17380 Query 69815 ATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGAC 69874 | | |||||||||||||| ||||||| |||| | || ||||| ||| ||| | || Sbjct 17381 AATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACAC 17440 Query 69875 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCT 69934 | || || ||||| | ||||| || | || || |||||| || ||||| || |||| Sbjct 17441 CAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCT 17500 Query 69935 CTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTA-TAGT 69992 |||| ||||||| |||| ||||| ||||||||| || || | |||| | | || || Sbjct 17501 CTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGA-GGTCTAGGTGT 17558 Query 69993 TCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTA 70052 || |||||||| || || |||||||||||||| || | ||||| || | ||||||||| Sbjct 17559 GCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTA 17618 Query 70053 TGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACA 70111 ||||||||||| | ||| ||||| | | | ||||| || | ||| || ||||| | || Sbjct 17619 AGTTTCAATAGCAGCTTCGATATCATCTCCG-TGAATCCCAACCGCTACGCGCATAAGCA 17677 Query 70112 TATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAG 70171 |||| || || || || | ||| | |||| || || || ||| |||| |||| Sbjct 17678 TATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAG 17737 Query 70172 TTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTT 70231 ||||||| |||||||| || ||| | | ||||| || ||||| || |||||| |||| Sbjct 17738 TTTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTT 17797 Query 70232 TATCCTTATATTTGGTAACTATATCCATAACAGTAGGT---GAGATAATCGGAGATCGTT 70288 | ||| || || | || |||| || ||| | || || || | | |||| Sbjct 17798 TTTCCGAATTGTTCATCACAATAT---TATAAGTTTTTTCAGAAATCATTGACGCGCGTT 17854 Query 70289 TACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGttttt 70348 | || |||| ||||| | ||| || | | |||||| | |||| ||| | ||||| Sbjct 17855 TCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTT 17914 Query 70349 ttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGAT 70408 | ||||| || || | ||| || | || || | || || || | |||||||| |||| Sbjct 17915 TAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGAT 17974 Query 70409 GTTGTGTAGTACAAGTA-GCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTA 70467 ||| || || || || || || |||| ||||| || |||||||||| | ||| || Sbjct 17975 GTTTAGTCGT-CATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTA 18033 Query 70468 ACTCCGTTATATAGCCCTTGAATAACTTT 70496 || || | ||| | ||| ||| || || Sbjct 18034 ACACCTTGATAAACTCCTGAAATGACCTT 18062 Score = 178 bits (196), Expect = 2e-39 Identities = 278/398 (70%), Gaps = 0/398 (0%) Strand=Plus/Plus Query 68707 GGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATAT 68766 || ||||| ||||||||||| |||| | || | || |||||| || || ||||| Sbjct 16054 GGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAA 16113 Query 68767 GGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCC 68826 ||||| | | |||||||| |||| ||||| | ||| |||||||| ||||| ||||| Sbjct 16114 GGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCG 16173 Query 68827 ACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCC 68886 | |||||| ||||| | ||||||| | ||||| | ||| | ||||||||| Sbjct 16174 AGCAATAATGAATTTCGTACACCATGTTCTGATATTTTTTGTTTCAACAAATTCCAATCC 16233 Query 68887 CAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATAT 68946 || | ||||| || |||||||||| | ||||||||||| ||| || || | | Sbjct 16234 CATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACCGGT 16293 Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 ||||| | ||| | ||||| || || | || | ||||||||| ||| |||||| Sbjct 16294 GATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCTAAT 16353 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||||| | ||| ||||| || || || | |||||| || || | ||| || | ||| Sbjct 16354 GCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTCCTTTGCGCGTAAAGAATCA 16413 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCC 69104 ||| || | | | | || || | |||||||||||| Sbjct 16414 AATTGAATACGCATAGCAAGGAAAGTATCTGCCAATCC 16451 Score = 105 bits (116), Expect = 9e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 69255 AACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGC 69314 ||||||||| || ||||| | || | ||||| || || || |||| | | | Sbjct 16750 AACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGA 16809 Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 ||||| | ||||||||||| | ||||||||||||||| || || |||||||| ||||| Sbjct 16810 ATATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATT 16869 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 | || ||||| | || ||||| || ||| | || ||||| ||||| ||||| || Sbjct 16870 AGATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGA 16929 Query 69435 TTCGATAATAGATTTCCAAAC 69455 ||| | ||| | | |||| || Sbjct 16930 TTCAAGAATTGCTGTCCAGAC 16950 >seq3144 Length=5517 Score = 188 bits (208), Expect = 1e-42 Identities = 208/275 (76%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 ||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||| Sbjct 4352 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 4293 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 | |||||| || || || ||| | |||| | ||||||||||| || || ||||| Sbjct 4292 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 4233 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA--- 40084 |||||||| || ||||| || || |||||| ||||||| || | | |||| Sbjct 4232 GCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTAAGTTTATAC 4173 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 | ||| ||||| ||||| || || | || ||||| ||| | |||||||| || || || Sbjct 4172 TCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTCG 4113 Query 40145 GCCTTTTTGTACATGTTCCATATAT-CACGATATT 40178 |||||||||||||| | ||| || | ||| ||||| Sbjct 4112 GCCTTTTTGTACATTTGCCAGATCTACACAATATT 4078 Score = 141 bits (156), Expect = 1e-28 Identities = 310/457 (68%), Gaps = 8/457 (2%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||||||||| |||||| || || |||||||| || || ||||| ||||| |||| Sbjct 5029 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 4970 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 || || ||||| |||||||| ||||| || |||||| |||| || Sbjct 4969 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACC 4910 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCAT-TTCACAAT 39491 | | | | |||||||| || |||||||| || ||| ||||||| | ||| | | Sbjct 4909 AAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG-T 4851 Query 39492 TCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGG 39551 |||| || || | |||||||||| || || |||| ||| |||| ||| || || | Sbjct 4850 TCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCG 4791 Query 39552 CCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGA--TGCAATAA-ATGTTTAA 39608 | || | ||| || | | ||| | | | | || || |||| || ||| | | Sbjct 4790 CTTCCGCTATAATAGCTTCTAC-AGTTTTTG--TTGGAGGTCGTGCACGAAGATGAGTGA 4734 Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 | | | || || || |||||||| | || ||||||| | ||||| |||||| |||| Sbjct 4733 ATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAA 4674 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAG 39728 | || | ||| ||||| | || | || || | |||||| || | || |||| ||||| Sbjct 4673 AAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAG 4614 Query 39729 AAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||||||| || ||||| || || ||||| || ||||| Sbjct 4613 AAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 4577 >seq453 Length=43245 Score = 105 bits (116), Expect = 9e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 69940 CTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999 ||||||||| |||| | | | ||| ||||| |||||||| | | || || ||| Sbjct 30221 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 30162 Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCA 70059 ||||| || || ||| ||| ||||| || |||| || || | | ||| || |||||| Sbjct 30161 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 30102 Query 70060 ATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGA 70119 ||||||| || ||||| | ||||||||| || | |||||||||||||| || || Sbjct 30101 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 30042 Query 70120 GGTCGTTCTAC 70130 |||| ||| || Sbjct 30041 GGTCTTTCAAC 30031 Score = 95.1 bits (104), Expect = 2e-14 Identities = 137/192 (71%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 68713 ACTATTTGAAATTCCCCAGATAACAC---TCTACGAGTGTAAATATTACTGGTATATGGT 68769 |||| ||||||||||||| ||| || ||| || |||||||| || || |||||| Sbjct 31915 ACTACTTGAAATTCCCCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGT 31859 Query 68770 TCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACC 68829 || | ||||||| ||||| ||||| ||| || |||||||| ||||| ||||| | | Sbjct 31858 TCAAAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATC 31799 Query 68830 AATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAA 68889 || ||| ||||| | |||| | |||| || ||||| | | | ||| ||||| Sbjct 31798 AACAAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCAT 31739 Query 68890 AGATCAGATGGT 68901 |||| || ||| Sbjct 31738 CGATCTGAAGGT 31727 Score = 84.2 bits (92), Expect = 3e-11 Identities = 174/258 (67%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 69124 GGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 69183 |||||||||||||| || ||||||||||||||| ||||||||||| ||| || Sbjct 31339 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 31280 Query 69184 ATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA- 69242 | |||||| | ||| | || |||||| | | || | || || | |||||||| Sbjct 31279 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 31220 Query 69243 -TCGTCCATCT----ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCT 69297 | || || | ||||||| || | || | || |||| ||||||||| ||| Sbjct 31219 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 31160 Query 69298 ACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTC 69357 || |||| | | ||||| | || || ||||||| |||| ||| | ||||| Sbjct 31159 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 31100 Query 69358 CCCAGATTTTGCTGATTA 69375 || ||||| | |||||| Sbjct 31099 CCAAGATTCTTTTGATTA 31082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686784503852640