Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1330 120 3e-22 seq1318 120 3e-22 seq2123 113 4e-20 seq352 89.7 4e-13 >seq1330 Length=20794 Score = 120 bits (132), Expect = 3e-22 Identities = 165/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 130754 TTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGT 130813 |||| |||||||| || ||||| || || |||| ||||||||||||||| | ||| Sbjct 16057 TTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAAGGT 16116 Query 130814 TCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACT 130873 ||||| |||| || ||| |||||||| | |||| ||| || ||||| ||| | Sbjct 16117 TCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCGAGC 16176 Query 130874 AATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCAT 130933 |||| ||||| || | ||| || | |||||| | ||||| || |||||||||| Sbjct 16177 AATAATGAATTTCGTACACCATGTTCTGATATTTTTTGTTTCAACAAATTCCAATCCCAT 16236 Query 130934 AGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTT 130983 | | ||||| | ||| ||||||||||| |||||| |||||||| Sbjct 16237 AAATCAGTAGGCTCAACA---TTCCACATATCGTATTGTAAAATGCCTTT 16283 >seq1318 Length=24839 Score = 120 bits (132), Expect = 3e-22 Identities = 175/246 (71%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| || || | |||||| ||||| || || ||||||||||||||||| ||| Sbjct 4079 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA 4020 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || | ||||| | ||||||||| || | || | ||| ||||||||||| || Sbjct 4019 AAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGG 3960 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || |||||||| || || | ||| | | || | || || | |||||| Sbjct 3959 GATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAAC 3900 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAA 27259 ||||| ||| || | ||| || || || ||||| ||||| |||||||| | | ||||| Sbjct 3899 TTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT-GTTTAAAAAAA 3841 Query 27260 TTTATT 27265 |||||| Sbjct 3840 TTTATT 3835 >seq2123 Length=30488 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || |||||||||||||||||||| | | | || | || || Sbjct 14813 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 14872 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||||||| |||||||||| || ||||| || || | ||| ||||| || Sbjct 14873 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGA 14932 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | || | || || | | |||||||| | ||| || | ||| Sbjct 14933 ATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTTT 14992 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || |||||||| ||||| ||||||||| Sbjct 14993 CCAGTTAGAGTTTTAACAAAAATTTGCATA 15022 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||||||||||||||||||| | | | || | || || || |||||||| Sbjct 15053 GTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGTTTACCA 15112 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||||||||| || || || || || | |||||| ||||| || ||| |||| Sbjct 15113 GCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGAATTTTGGTTTTT 15172 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | || | || || | || || || || | || || | |||||| || || || Sbjct 15173 ACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGGTGAGTGTC 15232 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || || |||||||||||| || Sbjct 15233 TTTACGAAGATTTGCATACCT 15253 Score = 91.5 bits (100), Expect = 1e-13 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || | ||| | ||| | || || ||||||||||| || || || Sbjct 15251 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 15310 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||||| || ||||| || ||| |||| ||||| || || || || || Sbjct 15311 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 15370 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || || || ||| | || | |||||| | | ||||||| Sbjct 15371 ATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACT 15430 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAAT 27260 || || || || | || || || || ||||| || ||||||||||| || ||| || Sbjct 15431 TCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATGATTGTTAATTAT 15490 Query 27261 TTATTAAA 27268 | |||||| Sbjct 15491 TAATTAAA 15498 >seq352 Length=65406 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 || || | ||| | ||| | || || ||||||||||| || ||||| || | || Sbjct 29423 AAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGA 29482 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| | |||||||| ||| | || | || |||||||| || || | ||| ||| Sbjct 29483 CCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCT 29542 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 ||||| ||||| ||| | |||| || || | || || ||||| ||||| Sbjct 29543 TTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTG 29602 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || ||||| ||||| || || ||||||||| Sbjct 29603 ATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCATA 29641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 || || | ||| | ||| | || || |||||||||||||| || || || | || Sbjct 29195 AAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGA 29254 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| | |||||||| ||| | || | || |||||||| || || | ||| ||| Sbjct 29255 CCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCT 29314 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 ||||| ||||| |||| | |||| || || | || || ||||| ||||| Sbjct 29315 TTATCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTA 29374 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || || || || || || || ||||||||| Sbjct 29375 ATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCATA 29413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424859430417312