Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3144 84.2 3e-11 seq453 84.2 3e-11 >seq3144 Length=5517 Score = 84.2 bits (92), Expect = 3e-11 Identities = 326/502 (65%), Gaps = 14/502 (3%) Strand=Plus/Plus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 94790 ||| || || |||| ||| ||||||||||||||| | ||| || |||| | || Sbjct 4501 AGTCCCTTGCATTCGAAAAAAAGCGGATTGGGCTCTTCGATGGATTTCCGATAAGGAATC 4560 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 ||| |||||||| || || | || ||||| |||||| || || ||||| ||||| Sbjct 4561 ---TTCATTTGCTGAACGTCTTGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGG 4617 Query 94851 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | ||| ||| | || | |||| | ||||| |||| | |||||||| | || | Sbjct 4618 AGCTTTC-GCGTCAATCTTTTGGTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTT 4676 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCA 94969 ||||||| || || ||||| || || ||| | || || ||||| || ||| | Sbjct 4677 CCAACGAACTAATTTCTCGAGATGAAGGATTGCATTGTGATTTTGC-ATGTCTCTTATTC 4735 Query 94970 AATTAT-TGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTT 95028 | | || | ||| ||| | || | ||| | | ||||| | |||||| ||| Sbjct 4736 ACTCATCTTCGTGCACGACCTCCAACAAAAACTGTAGAAGCTATTATAGCGGAAGCGGTT 4795 Query 95029 GAGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCT 95088 || || ||| ||| || || || | ||| | | || |||||||| | Sbjct 4796 ACAATAGAACAAGAATTTTTAACAGAAGCATTACCAGTTAATTTAATTGGTATGAACGCG 4855 Query 95089 GAAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTT-GAAGCAGATCGGGGT 95147 | |||| |||||||||| | |||| |||||||||| || | ||| | | || Sbjct 4856 AATTTAATGAAAAAATATATTGAATTTGTAGCTGATAGATTATTAGTGGCACTTGGTGGA 4915 Query 95148 GCCTCCAATT-TGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACG 95206 || |||| | || || ||||||| ||||| || ||||| ||||| | | | Sbjct 4916 GC--AAAATTGTATAATTCAGAGAATCCTTTTGATTTTATGGATTTAATTAGTTTACAAG 4973 Query 95207 GGAAGACAAACTTCTTCGAAAA 95228 | || ||||| ||||| ||||| Sbjct 4974 GTAAAACAAATTTCTTTGAAAA 4995 >seq453 Length=43245 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 |||| ||||| ||||||| ||||| || | || || |||||||| | || |||||| Sbjct 30034 GAAAGACCACAACACATGTTGATGCGTGTTTCTATTGGAATTCATGGTTATGATATTGAT 30093 Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAAC 104334 | | | || || || | |||||| | | ||| || | ||| |||| ||||| Sbjct 30094 GCAGCTATTGAAACTTATAATTTAATGTCCGAGAAATATTTT-ACTCATGCAAGTCCAAC 30152 Query 104335 CCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTT 104379 | || |||||||||||||||||||| |||||||| || ||||| Sbjct 30153 TTTGTTTAATGCTGGTACACCAAGACCACAAATGTCAAGCTGCTT 30197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583155258958240