Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq219 96.9 3e-15 >seq219 Length=63677 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 111729 ATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGG-CTCCAAACCAGTGATGT 111787 ||| | ||| | ||| || || ||| || ||||| | ||| || ||| || || | | Sbjct 20182 ATATATATGAGTATCACCCATGGTATGAATAAATTCACCAGGACTACAACCC-GTTACAT 20240 Query 111788 GTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCA 111847 | |||||||| | || | || | || || |||||||||||||| ||||| || || | Sbjct 20241 GAGCAATCATATGAGTTAATATAGCATAGCTTGCAATGTTAAATGGTACACCAAGTCCAA 20300 Query 111848 TATCTCCCGATCTTTGATATAGCTGACATGATA---GTTTATTTTGTGACACATAAAATT 111904 ||| | ||||||||||| || |||| |||| ||| | | ||| ||||| |||| Sbjct 20301 CATCACATGATCTTTGATAAAGAAGACACGATAATCTTTTCGTATTTGATACATAGAATT 20360 Query 111905 GACAAAGTACATGACAAGGAGGCAATGCCAT 111935 | |||| | |||||| || || |||||||| Sbjct 20361 GGCAAAACATATGACATGGTGGTAATGCCAT 20391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391876450507588