Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1318 120 2e-22 seq1364 113 3e-20 seq2123 105 5e-18 seq352 89.7 4e-13 >seq1318 Length=24839 Score = 120 bits (132), Expect = 2e-22 Identities = 172/239 (72%), Gaps = 14/239 (6%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||||||||| ||||| |||||||| ||| ||||| | || || ||||| Sbjct 3849 AACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGT 3908 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 | ||| ||| |||| |||||| ||||||| || |||||||| | || Sbjct 3909 AGCGA-----TACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCC 3963 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG--CAGCTTGTC 27959 ||| || ||||| ||||| ||||| || ||||| || || || | ||| || ||| || Sbjct 3964 CGGATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCA-CTT-TC 4021 Query 27960 CGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 ||||||||| || |||||||| || || || ||||| | ||||| || || |||| Sbjct 4022 CGATTACAATATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGGCG 4080 >seq1364 Length=43964 Score = 113 bits (124), Expect = 3e-20 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || |||||||| || ||| |||||| |||| || || | | Sbjct 15699 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 15758 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || || | || ||| || || ||||||||||| |||| ||| | Sbjct 15759 GATACCATTGACCAA--GTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATC 15816 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || |||||||| ||||||||||| || | ||| | |||||| ||||||| Sbjct 15817 AGCAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACA 15876 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 | |||||||| ||| ||| | ||| | || | ||||| Sbjct 15877 ATATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTT 15916 >seq2123 Length=30488 Score = 105 bits (116), Expect = 5e-18 Identities = 166/234 (71%), Gaps = 14/234 (6%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| |||||||| ||||| ||| ||||| | || || || || Sbjct 15021 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 14962 Query 27850 GACGATGTACAATCGGTCAAACAAAA---AATAGCC--GACAAAGAAGGTGTTCCGATGG 27904 || ||| |||| |||| |||| || | | |||||||||||| |||| | Sbjct 14961 GA-----TACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAG 14907 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| | ||||| ||||| |||||| | || || | ||| | | | || || | Sbjct 14906 ATCAGCAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACT 14847 Query 27965 ACAACATCCAAAAAGAG--AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || ||||||||| | ||||| |||||||| | ||| | ||||| || Sbjct 14846 ACAATATTCAAAAAGAGTCAACACTT--CATTTGGTGCTTCGTCTTCGTGGTGG 14795 >seq352 Length=65406 Score = 89.7 bits (98), Expect = 4e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| || ||||| ||||| |||||||||||||| ||||| |||| ||| ||||| || || Sbjct 29983 GGATCAACAACGCTTAATCTTTGCCGGAAAACAGTTGGAAGACGGACGTAGCTTATCTGA 29924 Query 27963 TTACAACATCCAAAAAGAG 27981 ||||||||| || |||||| Sbjct 29923 TTACAACATTCAGAAAGAG 29905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355799616531252