Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2123 165 2e-35 seq1364 122 2e-22 seq348 120 7e-22 seq147 98.7 2e-15 seq642 91.5 3e-13 seq1360 86.0 1e-11 >seq2123 Length=30488 Score = 165 bits (182), Expect = 2e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || || || |||||||| ||||||||||| ||||||||||| | |||||| Sbjct 15257 CGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTA 15316 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||| || || ||||| ||||| ||||| ||||| ||||| || |||| |||| Sbjct 15317 CGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCT 15376 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| || || ||| ||| || | || || ||||| || |||||| || || Sbjct 15377 TCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGG 15436 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || || || || || || | ||||| Sbjct 15437 GTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 15477 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||||||||| || |||||||||||||||||||||| ||| || | |||||| Sbjct 14582 AGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCT 14641 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || ||||| || | ||||| || || ||||| | || || || || Sbjct 14642 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATCCCCTCTTTATCT 14701 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| || | || ||||| ||||| ||| ||||| || || |||||| Sbjct 14702 TGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTC 14761 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || |||||||| | ||||| Sbjct 14762 TTACCAGTAAGTGTTTTTACAAAAATTTGCAT 14793 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||| || ||||||||||| || || || || | |||||| Sbjct 14800 ACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGT 14859 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||| || || || || || ||||| || || ||||| || || || |||| || Sbjct 14860 TCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACC 14919 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| || |||||| ||| || | |||||||| || || ||||| || | Sbjct 14920 TTCTTTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAA 14979 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || ||||| || ||||| || ||||| | ||||| Sbjct 14980 AGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 15021 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || ||||||||||| |||||||| || || || || | |||||| Sbjct 15028 ACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGT 15087 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||| || || || || || ||||| || || ||||| ||||| || || | || Sbjct 15088 TCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACC 15147 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| || || || || ||| || | |||||||| || ||| || || || | Sbjct 15148 CTCCTTATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAA 15207 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| |||||||| || | ||||| Sbjct 15208 GGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 15249 >seq1364 Length=43964 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || ||||| ||||| |||||||| || ||||| | | ||| | ||||||| Sbjct 15910 AGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCT 15851 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| || || || || ||||| | |||||| || || || |||| ||||| ||||| Sbjct 15850 TCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCT 15791 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| || | || ||||| || ||| || || || ||||| || || Sbjct 15790 TGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTT 15731 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | ||||| Sbjct 15730 TTACCGGTAAGAGTCTTAACGAAAATTTGCAT 15699 Score = 105 bits (116), Expect = 2e-17 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||| |||||||||||||| ||||| || | | || | ||||||| Sbjct 15682 AGAACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGACAAAGTACGTCCATCT 15623 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 |||||||| || || |||||||| | |||||| || || ||||||| Sbjct 15622 TCCAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAA 15577 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 ||| ||||| || || || | | |||||| || ||||| | ||||| ||||| || || Sbjct 16073 CTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTGAAT 16014 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 |||| || || | ||| || || ||||| |||||| || ||||| || || || || Sbjct 16013 CTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTTCCC 15954 Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||||||||| | |||||| Sbjct 15953 GGTGAGGGTCTTTACAAAAATCTGCAT 15927 >seq348 Length=51996 Score = 120 bits (132), Expect = 7e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| ||||| || ||||| |||| ||| ||||||||||||| | |||||| | | Sbjct 39580 TCCACGTAGTCTAAGTACAAGATGAATTGTGCACTCTTTTTGGATATAATAATCTGACAA 39639 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||| ||||| | ||| |||| || || |||||||||||||| |||||||||| Sbjct 39640 GGTACGTCCTTCTTCTAATTGCGTGCCAGCAAAAATAAGGCGTTGTTGATCAGGAGGAAT 39699 Query 211010 TCCTTCCTTGTCCTGGATCTT 211030 |||||| ||||| | ||||| Sbjct 39700 TCCTTCTTTGTCATAAATCTT 39720 >seq147 Length=125324 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 210923 CTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGA 210981 |||||| ||||| |||||||| | ||||| | || |||||| | || | || || | Sbjct 74557 CTCTTTCTGGATATTATAATCACTCAAGGTACGCTC-ATCTTCTAATTGACTTCCAGCAA 74615 Query 210982 AGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGT 211041 | |||| ||||| ||||| |||| |||||||||||| |||||||| ||| || Sbjct 74616 AAATAAAACGTTGACTATCAGGGGGAATTCCTTCCTTGTCTTGGATCTTGCATTTAACTA 74675 Query 211042 TTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTA 211101 |||||| ||||| || ||||| | || | ||| ||||| || || || |||| Sbjct 74676 GGCTGATGGTATCAGACGACTCTACCTCCAAGGTTACCGTTTTTCCGGTTAGTGTTTTTA 74735 Query 211102 CAAACACCTGCAT 211114 |||| |||||||| Sbjct 74736 CAAATACCTGCAT 74748 >seq642 Length=35260 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| || ||||| || | || ||||||| ||| || |||||||| | | || Sbjct 6659 ACGTAGTCTAAGTACAAGATGCAACGTAGACTCTTCTTGAATATTATAATCTGATAAAGT 6600 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||||||| |||| ||||| || || || |||| ||||| ||||||||||||| || Sbjct 6599 TTTTCCATCCTCCAATTGCTTACCAGCAAAAATAATACGTTGCTGGTCAGGAGGAATGCC 6540 Query 211013 TTCCTTGTCCTGGATCTT 211030 ||| || | || || ||| Sbjct 6539 TTCTTTTTTCTCGACCTT 6522 >seq1360 Length=52185 Score = 86.0 bits (94), Expect = 1e-11 Identities = 93/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 210992 TTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGT 211051 |||||| ||||||| ||| | ||| || ||| ||||| || || | || || || Sbjct 42458 TTGTTGATCAGGAGAAACCAC---CTTATCTTGGGTCTTTGCCTTGACTTGATCAATAGT 42402 Query 211052 GTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTG 211111 ||||| |||||| ||||||||||| |||||||| | |||||| |||||||| | ||| Sbjct 42401 ATCAGAAGATTCAACTTCGAGAGTGATAGTCTTTCCAGCGAGAGTTTTTACAAAAATCTG 42342 Query 211112 CAT 211114 ||| Sbjct 42341 CAT 42339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158937007731740