Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2123 111 1e-19 seq1318 100 2e-16 >seq2123 Length=30488 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||||||||| || |||||||| | ||| || || |||| ||||| |||||||| || || Sbjct 15286 CTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAA 15345 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 |||||||| |||||||| | ||| | | |||||||| ||| ||| || || | | | Sbjct 15346 AATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCT-TGAATTTTTGCTTTAACTT 15404 Query 39213 CGCCACC-GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | || || ||| || || || || | ||||| | ||||| || || ||||||| Sbjct 15405 GGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAA 15464 Query 39272 CAAAGATTTGCAT 39284 | ||||||||||| Sbjct 15465 CGAAGATTTGCAT 15477 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || ||||||||| ||||| || || | ||| |||||| | || || Sbjct 14812 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTC 14871 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||| ||||| || || || || ||||| ||||| || | ||| | | |||||||| | Sbjct 14872 AAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCT-T 14930 Query 39195 GATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || | | || || | | | | |||||| ||||| || |||| || || ||| Sbjct 14931 GAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTT 14990 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || ||||||||||| |||||||| Sbjct 14991 TTCCAGTTAGAGTTTTAACAAAAATTTGCAT 15021 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| |||||||| ||||| || |||| ||| |||||| | || ||||| || Sbjct 15046 ATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTG 15105 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||| || || || || ||||| |||||||| | ||| | | ||| || || ||| ||| Sbjct 15106 TTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCT-TGAATTT 15164 Query 39201 CTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 |||| | | | | | ||||| ||||| ||||||| ||||| |||| || | Sbjct 15165 TGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGG 15224 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || ||||||||||| Sbjct 15225 TGAGTGTCTTTACGAAGATTTGCAT 15249 >seq1318 Length=24839 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| || | ||| || | ||||| |||| || |||||||| ||||| ||||||| Sbjct 4079 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA 4020 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 ||||| ||| | || || | |||||| || |||||||| | ||| || || || | ||| Sbjct 4019 AAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGG 3960 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | ||||| || ||||| | ||||| | | | |||||||| || || Sbjct 3959 GATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAAC 3900 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || | || || |||| || || || ||||||||||| |||||||| |||| Sbjct 3899 TTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTA 3847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429469816880588