Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq1318 100 2e-16 seq1364 91.5 1e-13 >seq1318 Length=24839 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 9/231 (4%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGG--AATCTT 101087 |||| ||| || |||||||||||||||||||||||||||| | ||| | ||||| Sbjct 4060 ACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGG--AAAGTGAACGTCCATCTT 4003 Query 101088 CCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGG 101147 | || ||||| || ||| |||| | | |||||| || ||| | |||||||| || Sbjct 4002 CTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTT 3943 Query 101148 CAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGT 101205 |||||||| ||| || | | | || || | || || ||| | ||||| || Sbjct 3942 GAATTTTTTCTTTGACTTTATCGATGGTATCGCT--ACTTTCAACTTCTAAAGTAATGGT 3885 Query 101206 TTTGCCCGTCAATGTTTTAATAAAAATTTGCATTATTACAATATATTTTTT 101256 ||| || || | |||||||| |||||||||||| ||| || | |||| || Sbjct 3884 TTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTA-AAAAAATTTATT 3835 >seq1364 Length=43964 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 101041 AGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCC 101100 |||||| || ||||| ||||||||||| | || || ||||||||||||||| || Sbjct 15896 AGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACC 15837 Query 101101 CGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTT 101160 ||| | || | | ||| || || ||| | |||||||||||| ||| || ||| Sbjct 15836 GGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTT 15777 Query 101161 CACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGT 101220 || | | | | || |||| |||| | ||| | ||||||||||| || || | || Sbjct 15776 AACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGT 15717 Query 101221 TTTAATAAAAATTTGCAT 101238 |||| ||||||||||| Sbjct 15716 CTTAACGAAAATTTGCAT 15699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409588525081284