Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3144 228 7e-55 >seq3144 Length=5517 Score = 228 bits (252), Expect = 7e-55 Identities = 323/449 (72%), Gaps = 4/449 (1%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||| ||| |||||| || || ||||| || ||||| |||||||| ||||| |||| ||| Sbjct 5026 AACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTGTAA 4967 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 ||| |||||||||||||| ||||| || || || |||| | | || Sbjct 4966 ACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACCAAG 4907 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAG-TTCGCAGTTAA 4425 || || | |||| |||||||||||||| ||||| | |||| | ||||| ||| | Sbjct 4906 TGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC-GTTCA 4848 Query 4426 TTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTT 4485 | |||||||| | || |||| || | ||| ||||| ||||||||||| || || |||| Sbjct 4847 TACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCGCTT 4788 Query 4486 CTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAG-TATCCAAACAAT 4544 | | || ||| ||| || | | | | | ||| | || ||| | || || Sbjct 4787 CCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTGAATAAG 4729 Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 | ||| ||||||||||||||||| ||||| |||| ||| |||||||| ||||| ||| Sbjct 4728 AGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAAAAGTT 4669 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 ||||| ||||| | ||||| || || | |||||| || | || || | ||||||||| Sbjct 4668 AATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAGAAAAG 4609 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTAC 4693 ||||| ||||| || |||||||||||||| Sbjct 4608 AATATTCCTTCAACAGCGGCAAACGCTAC 4580 Score = 188 bits (208), Expect = 6e-43 Identities = 219/295 (74%), Gaps = 3/295 (1%) Strand=Plus/Minus Query 4801 TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATAT 4860 ||| | |||| || | ||||||| || || | ||| |||||||| ||||| |||| Sbjct 4393 TTTGAGATGGCTCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATAT 4334 Query 4861 TTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTAC 4920 |||| || ||||||||||| ||||| ||||| ||||||| | ||| ||||| |||| Sbjct 4333 TTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTAC 4274 Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| | ||| ||||| ||||| || || ||||| || ||| ||||| || ||||||| Sbjct 4273 TAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAA 4214 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTT---TTTCCAGTGGGGCAAATCTT 5037 | ||||| |||||| | | ||| ||| |||||||| | ||| | || ||| | Sbjct 4213 CGTGAGAAATAAAGAATTTTTCTTCATCGTTAAGTTTATACTCCCAATCATTCATATCCT 4154 Query 5038 TAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 | | | |||||||| |||||||||||||| || ||||| || ||||||||||| Sbjct 4153 TGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACAT 4099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426974257240508