Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1330 408 6e-109 seq3144 217 2e-51 seq453 105 9e-18 >seq1330 Length=20794 Score = 408 bits (452), Expect = 6e-109 Identities = 686/986 (70%), Gaps = 10/986 (1%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG-CACATCAATG 77982 |||||||||||| ||||||||||| || ||||| |||| || || || || Sbjct 17082 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 17141 Query 77983 ACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 78042 ||| | | ||| | | ||| | ||||||||| ||||| | | ||| || ||| || Sbjct 17142 -CCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAA 17200 Query 78043 ATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCA 78102 ||| ||| || | | | |||||| ||||| ||||| ||||| | ||| | ||| || | Sbjct 17201 ATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAA 17260 Query 78103 TAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTC 78162 ||| |||| |||||| | ||||| ||| || || | | || || ||||| || |||| Sbjct 17261 AAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTC 17320 Query 78163 CCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAG 78222 | ||||| | |||||| || || ||||||||||| | ||||| |||||||| || || | Sbjct 17321 CTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCATTTG 17380 Query 78223 ATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCC 78282 | ||||||||||||| ||||||| ||| | || ||||| ||| |||| | | Sbjct 17381 AATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACAC 17440 Query 78283 CTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCT 78342 | || || ||||| ||||||| || | ||||| |||||| ||||| ||||| |||| Sbjct 17441 CAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCT 17500 Query 78343 CTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 78401 |||| ||||| |||| ||||| ||||||||| || || | |||| | | || Sbjct 17501 CTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGTG 17559 Query 78402 CCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTAT 78461 || |||||||| || ||||||||||| || ||||| | ||||| || | |||||||| Sbjct 17560 CCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTAA 17619 Query 78462 GTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATA 78521 ||||||||||| | ||| || || | ||||| || |||||||| ||||| | |||| Sbjct 17620 GTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCATA 17679 Query 78522 TGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 78581 || || || | || | || | |||| || | || ||| |||| | |||| Sbjct 17680 TGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGTT 17739 Query 78582 TTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTA 78641 ||||| |||||||| || ||| | | ||||| || ||||| || |||||| ||||| Sbjct 17740 TTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTTTT 17799 Query 78642 TCTTTGTATTTGGTAACAATATCCATGACAGTAGTT---GAAATAATAGGAGATCGTACA 78698 || | || | ||||||| | ||| || ||||| || | | ||| Sbjct 17800 TCCGAATTGTTCATCACAATAT---TATAAGTTTTTTCAGAAATCATTGACGCGCGTTTC 17856 Query 78699 CCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGttttttt 78758 || |||| ||||| | ||| ||| | | |||||| | |||| ||| | |||||| Sbjct 17857 CCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTTTA 17916 Query 78759 GTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGT 78818 ||||| || || |||||||| ||||| || | ||||| || | ||||| || |||||| Sbjct 17917 GTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGATGT 17976 Query 78819 TGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACC 78878 | || || | || || ||||||| || ||| ||||||| || | ||| | || Sbjct 17977 TTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAACA 18036 Query 78879 CCATTATATAGTCCTTGAATAACTTT 78904 || | ||| | |||| ||| || || Sbjct 18037 CCTTGATAAACTCCTGAAATGACCTT 18062 Score = 176 bits (194), Expect = 6e-39 Identities = 250/350 (71%), Gaps = 4/350 (1%) Strand=Plus/Plus Query 77114 AGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATA 77173 ||| ||||| ||||||||||| |||| | || | || |||||| || || ||||| Sbjct 16053 AGGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATA 16112 Query 77174 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGC 77233 ||||| | | ||||||| ||||| ||||| | |||||| ||||| ||||| ||||| Sbjct 16113 AGGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGC 16172 Query 77234 CACCAATAAACTATTTCTGAGACCATGTGTTCTG--ATTTTATCTTTTAGATATTTCCAA 77291 | |||||| ||||| | |||| ||||||| ||||| | ||| | | |||||| Sbjct 16173 GAGCAATAATGAATTTCGTACACCA--TGTTCTGATATTTTTTGTTTCAACAAATTCCAA 16230 Query 77292 TCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCA 77351 ||||| | ||| | ||| |||||| ||| | ||||||||||| ||| || || | | Sbjct 16231 TCCCATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACC 16290 Query 77352 TATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCC 77411 |||||| | ||| | ||||| || || | ||| | ||||||||| ||||| Sbjct 16291 GGTGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCT 16350 Query 77412 AATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGC 77461 ||||| || | ||| ||||| || || || | |||||| || || | ||| Sbjct 16351 AATGCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTCCTTTGC 16400 Score = 111 bits (122), Expect = 2e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 77663 AACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGC 77722 |||||||||| ||| |||||| || | ||||| || || || |||| | | | | Sbjct 16750 AACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGA 16809 Query 77723 ATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTT 77782 ||||| | ||||| ||||| | ||||||||||||||| || || ||||||||||| || Sbjct 16810 ATATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATT 16869 Query 77783 GCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGA 77842 || ||| || || || || || || ||| | || || || ||||| ||||| || Sbjct 16870 AGATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGA 16929 Query 77843 TTCGATAATAGATTTCCAGAC 77863 ||| | ||| | | ||||||| Sbjct 16930 TTCAAGAATTGCTGTCCAGAC 16950 >seq3144 Length=5517 Score = 217 bits (240), Expect = 2e-51 Identities = 325/455 (71%), Gaps = 16/455 (4%) Strand=Plus/Minus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 ||||||||| ||||||||| || || ||||| || || ||||| ||||| |||| Sbjct 5029 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 4970 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATA-AAtttttttAAATC 47955 || || |||||||||||||| ||||| ||| |||||| |||||| | | | Sbjct 4969 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-C 4911 Query 47956 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCAT-TTCACAA 48014 | | | | | | |||||| || || ||||| |||||| ||||||| | ||| | Sbjct 4910 CAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG- 4852 Query 48015 TTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACA 48074 ||||| || || | |||||||||| || || || | ||| |||||||| || || || Sbjct 4851 TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACC 4792 Query 48075 GCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGA-----TACAACAA-ATGT 48128 || ||| |||| || | | ||| |||| ||| |||| | || || ||| Sbjct 4791 GCTTCCGCTATAATAGCTTCTACAGTTT------TTGTTGGAGGTCGTGCACGAAGATGA 4738 Query 48129 TTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTA 48188 | || | | |||||||||||||||||| | |||||||||| | ||||| |||||| Sbjct 4737 GTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTG 4678 Query 48189 GAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT 48248 ||||| || | || ||||| | ||| | ||| || | |||||| |||| |||||||| | Sbjct 4677 GAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCT 4618 Query 48249 CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||||||||| ||||| || || ||||| || Sbjct 4617 CCAGAAAAGAATATTCCTTCAACAGCGGCAAACGC 4583 Score = 152 bits (168), Expect = 7e-32 Identities = 215/300 (72%), Gaps = 4/300 (1%) Strand=Plus/Minus Query 48411 TAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAAT 48470 |||| ||| || || || |||||||| || || |||||||| || ||||||||| Sbjct 4373 TAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATGATCTGAAAT 4314 Query 48471 CCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTC 48530 || ||||||||||| ||||||| || || || || ||| ||| ||||| | ||||| Sbjct 4313 CCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTT 4254 Query 48531 TCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTT 48590 ||||| || || ||||| || ||||| || || || || || |||||| ||||| Sbjct 4253 TCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTT 4194 Query 48591 TCGTTGGAAGTCAGTTTA---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 48647 || | | |||||| | ||| ||||| ||||| || || | || ||||| ||| Sbjct 4193 TCTTCATCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCA 4134 Query 48648 GCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATAT-CACTGTATTGGAT 48706 | ||||||||||| || || || ||||| ||||| | ||| || | ||| |||| ||| Sbjct 4133 ACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACACAATATTTGAT 4074 >seq453 Length=43245 Score = 105 bits (116), Expect = 9e-18 Identities = 198/290 (68%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 77121 ACTATTTGAAATTCTCCAGACAATAC---TCTACGAGTGTAAATATTACTGGTATATGGT 77177 |||| ||||||||| ||| ||||| ||| || |||||||| || || |||||| Sbjct 31915 ACTACTTGAAATTCCCCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGT 31859 Query 77178 TCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACC 77237 || | ||||||||||||| | ||| ||| ||||| ||||| ||||| ||||| | | Sbjct 31858 TCAAAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATC 31799 Query 77238 AATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAA 77297 || ||| ||||| | |||| | ||||| || ||||| | | | ||| ||||| Sbjct 31798 AACAAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCAT 31739 Query 77298 AGATCTGAAGGTACAAC------ATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCA 77351 ||||||||||| || |||| | ||||| || || || || |||||| Sbjct 31738 CGATCTGAAGGTTGTACTCCTGTTCCCCACAATTCGTAATGAAGGATACCTTTACTAATC 31679 Query 77352 TATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACA 77401 || || | |||||| ||||| || ||| | |||| | |||||| Sbjct 31678 GGGGAACCCTCATATGTAGGGTAAGGACCATCTTTAGCAGCAATTTCACA 31629 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 78348 CTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 78407 || ||||| |||| | | | ||| ||||| |||||||| | || || ||| Sbjct 30221 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 30162 Query 78408 TTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 78467 ||||| || || ||| |||||| ||||| |||| || || | || ||| || |||||| Sbjct 30161 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 30102 Query 78468 ATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGA 78527 ||||||| || || || | ||||||||| | | |||||||||||||| || || Sbjct 30101 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 30042 Query 78528 GGTCTTTCAAC 78538 ||||||||||| Sbjct 30041 GGTCTTTCAAC 30031 Score = 96.9 bits (106), Expect = 5e-15 Identities = 198/292 (68%), Gaps = 8/292 (3%) Strand=Plus/Minus Query 77532 GGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATA 77591 |||||||||||||| || ||| ||||||||||| ||||||||||| || || Sbjct 31339 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 31280 Query 77592 ATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA- 77650 | |||||| | ||| | | ||| |||||| | | || | || || | |||||||| Sbjct 31279 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 31220 Query 77651 -TCTTCCATCT----ATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCT 77705 | ||| || | ||||||| | || | || || |||| ||||||||| ||| Sbjct 31219 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 31160 Query 77706 ACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTG 77765 || |||| | | ||||| | || || ||||||| |||| ||| | ||||| Sbjct 31159 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 31100 Query 77766 CCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAA 77817 || ||||| | ||| || |||| |||||| || || |||||| | ||| Sbjct 31099 CCAAGATTCTTTTGATTAGATTTTTCATTGCAAGAATC--TATAAATATTAA 31050 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 78751 GtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAAT 78810 ||||||||||||||||||||| |||||| | || |||||||| || | ||||||||||| Sbjct 29655 GTTTTTTTGTTTCCTTGTGTAAATTAGAAATTGCAATTCTTGCCGCCAAAATAGCATAAT 29596 Query 78811 CAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAG 78870 ||||||| | ||| | || || |||| ||||| ||| |||| | || | || Sbjct 29595 CAGGATGATTACAAGTTAGATATGCAGCAGTTTCAGCCGCCAAATTATCAAGTTCCACAG 29536 Query 78871 TTGTGACCCCATTATA 78886 | ||||| || | ||| Sbjct 29535 TGGTGACACCCTGATA 29520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694543099680640