Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1330 450 2e-121 seq3144 194 2e-44 seq453 113 6e-20 >seq1330 Length=20794 Score = 450 bits (498), Expect = 2e-121 Identities = 697/985 (71%), Gaps = 8/985 (1%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA-CACATCAATG 76577 |||||||||||| ||||||||||| ||||||||| |||| |||| || || || Sbjct 17082 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAAT-AAAC 17140 Query 76578 ACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 76637 ||| | | ||| | | ||||| ||||||||| ||||| | | ||| || ||| || Sbjct 17141 TCCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAA 17200 Query 76638 ATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCA 76697 ||| ||| || | | | |||||| ||||| ||||| ||||| | ||| | || || | Sbjct 17201 ATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAA 17260 Query 76698 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTC 76757 ||| |||| |||||| | ||||| ||| || || | | ||||| ||||| || |||| Sbjct 17261 AAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTC 17320 Query 76758 CCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAG 76817 | ||||| | |||||| ||||| ||||||||||| | ||||| |||||||| || || | Sbjct 17321 CTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCATTTG 17380 Query 76818 ATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGC 76877 | |||||||||||||| ||||||| ||| |||||||| ||| ||| | | Sbjct 17381 AATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACAC 17440 Query 76878 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCT 76937 | || || ||||| | ||||| || | || || |||||| || |||||||| |||| Sbjct 17441 CAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCT 17500 Query 76938 CTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 76996 |||| |||||| |||| ||||| ||||||||| || || | |||| | | || Sbjct 17501 CTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGTG 17559 Query 76997 CCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTAT 77056 || ||||||||||| || |||||||| ||||| || | ||||| || | |||||||| Sbjct 17560 CCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTAA 17619 Query 77057 GTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATA 77116 ||||||||| | ||||| ||||| | ||||| || || || || ||||| | |||| Sbjct 17620 GTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCATA 17679 Query 77117 TGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 77176 || || || || || || || | |||| || | || ||| |||| | |||| Sbjct 17680 TGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGTT 17739 Query 77177 TTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTG 77236 ||||| |||||||| || ||| | | ||||| || ||||| || ||||| ||||| Sbjct 17740 TTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTTTT 17799 Query 77237 TCCTTATATTTGGTAACAATATCCATGACAGTGGT-AGAAATAATTGGAGATCGTATTCC 77295 ||| || || | ||||||| || | | | |||||| |||| | ||| | || Sbjct 17800 TCCGAATTGTTCATCACAATAT-TATAAGTTTTTTCAGAAATCATTGACGCGCGTTTCCC 17858 Query 77296 ATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGT 77355 |||| ||||| | ||| ||| | | ||||| | || | | ||| | |||||| || Sbjct 17859 TGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTTTAGT 17918 Query 77356 TTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTG 77415 ||| || || ||||| || || || || | |||||| || | |||||||| ||||||| Sbjct 17919 TTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGATGTTT 17978 Query 77416 TGTAGTGCAGGT-GGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTC 77474 || || || | || || ||||||| || ||| |||||||||| | ||| |||| | Sbjct 17979 AGTCGT-CATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAACAC 18037 Query 77475 CGTTATATAGCCCTTGAATAACTTT 77499 | | ||| | ||| ||| || || Sbjct 18038 CTTGATAAACTCCTGAAATGACCTT 18062 Score = 178 bits (196), Expect = 2e-39 Identities = 262/367 (71%), Gaps = 8/367 (2%) Strand=Plus/Plus Query 75709 AGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATA 75768 ||| ||||||||||||||||| |||| | || | ||| |||||| || || ||||| Sbjct 16053 AGGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATA 16112 Query 75769 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGC 75828 ||||| | | ||||||| ||||| ||||| | ||| || ||||| ||||| ||||| Sbjct 16113 AGGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGC 16172 Query 75829 CACCAATAAACTATTTCTGAGACCATGTGTTCTG--ATTTTATCTTTTAGATATTTCCAA 75886 | |||||| ||||| | |||| ||||||| ||||| | ||| | | |||||| Sbjct 16173 GAGCAATAATGAATTTCGTACACCA--TGTTCTGATATTTTTTGTTTCAACAAATTCCAA 16230 Query 75887 TCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCA 75946 ||||| | ||| | || |||||| ||| | ||||||||||| ||| || ||| | | Sbjct 16231 TCCCATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACC 16290 Query 75947 TATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCT 76006 |||||| | ||| | || || | ||| |||| | |||||| || || ||| Sbjct 16291 GGTGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCT 16350 Query 76007 AACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATC--TTGCGCTTCAAGAC 76064 || ||||| | ||| ||||| || || || | |||||| || || |||||| | |||| Sbjct 16351 AATGCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTCCTTTGCGCGTAAAGA- 16409 Query 76065 TATCAAA 76071 |||||| Sbjct 16410 -ATCAAA 16415 >seq3144 Length=5517 Score = 194 bits (214), Expect = 2e-44 Identities = 362/523 (69%), Gaps = 23/523 (4%) Strand=Plus/Minus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 ||||||||| |||||| || || ||| ||||| || || ||||| ||||| |||| Sbjct 5029 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 4970 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATA-AAtttttttAAATC 46444 || || |||||||||||||| ||||| |||||| |||||| | | | Sbjct 4969 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-C 4911 Query 46445 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCAT-TTCACAA 46503 | | | | | | |||||| || || ||||| ||||| ||||||| | ||| | Sbjct 4910 CAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG- 4852 Query 46504 TTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACA 46563 ||||| || || | || || |||| || || || | ||| |||||||| || || || Sbjct 4851 TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACC 4792 Query 46564 GCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGA-----TGCATCAA-ATGT 46617 || |||| ||| || | | ||| |||| ||| |||| |||| || ||| Sbjct 4791 GCTTCCGCTATAATAGCTTCTACAGTTT------TTGTTGGAGGTCGTGCACGAAGATGA 4738 Query 46618 TTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTA 46677 | || | | |||||||||||||||||| | |||||||||| | ||||| |||||| Sbjct 4737 GTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTG 4678 Query 46678 GAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT 46737 ||||| || | || ||||| | ||| | || || | |||||| || | |||||||| | Sbjct 4677 GAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCT 4618 Query 46738 CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG--G 46795 |||||||||||||| ||||| ||||| || || || ||||| | || | || || | Sbjct 4617 CCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG--ACGTTCAGCAAATGAAG 4560 Query 46796 CATCATTAT---GAATCCACCTTTGAGCCCAATCAGCCTTTTT 46835 || |||| |||||| | |||||||||| || ||||| Sbjct 4559 ATTCCTTATCGGAAATCCATCGAAGAGCCCAATCCGCTTTTTT 4517 Score = 167 bits (184), Expect = 3e-36 Identities = 208/282 (74%), Gaps = 10/282 (4%) Strand=Plus/Minus Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 |||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| Sbjct 4352 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 4293 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTA 47040 | ||| || || || ||| ||| ||||| ||||| ||||| || || ||||| Sbjct 4292 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 4233 Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAATATTT---TTCATCGGTAGTCAGTTTA 47097 || ||||| || ||||| || || |||||| |||| ||||||| || |||||| Sbjct 4232 GCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTA---AGTTTA 4176 Query 47098 ---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCC 47154 | ||| ||||| ||||| || || | || ||||| ||| | ||||| ||||| || Sbjct 4175 TACTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCT 4116 Query 47155 TCTGCTTTTTTATACATATTCCATATAT-CACGATATTGGAT 47195 || || ||||| ||||| | ||| || | ||| ||||| ||| Sbjct 4115 TCGGCCTTTTTGTACATTTGCCAGATCTACACAATATTTGAT 4074 >seq453 Length=43245 Score = 113 bits (124), Expect = 6e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 76943 CTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 77002 |||||||| |||| | | | ||| ||||| |||||||| | || || ||| Sbjct 30221 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 30162 Query 77003 TTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 77062 |||||||| || ||| ||||||||| || |||| || || | || ||| || |||||| Sbjct 30161 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 30102 Query 77063 ATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGA 77122 ||| |||| || ||||| | ||||||||| | || |||||||||||||| || || Sbjct 30101 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 30042 Query 77123 GGTCGTTCTACA 77134 |||| ||| ||| Sbjct 30041 GGTCTTTCAACA 30030 Score = 95.1 bits (104), Expect = 2e-14 Identities = 176/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 76127 GGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATA 76186 |||||||||||||| || ||||||||||||||| || |||||||| ||| || Sbjct 31339 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 31280 Query 76187 ATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA- 76245 | |||||| | ||| | | ||| |||||| | | || | || || | |||||||| Sbjct 31279 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 31220 Query 76246 -TTTTCCATCTATCACAAACATATTAAG----AGCTATAGATGCTAGATTACAAACGGCT 76300 ||||| || | | |||| ||| || | || || |||| ||||||||||||| Sbjct 31219 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 31160 Query 76301 ACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTT 76360 || |||| | | ||||| | || || || |||| |||| || | ||||| Sbjct 31159 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 31100 Query 76361 CCAAGATTTTGTTGGTT 76377 |||||||| | ||| || Sbjct 31099 CCAAGATTCTTTTGATT 31083 Score = 95.1 bits (104), Expect = 2e-14 Identities = 134/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 75721 TTGAAATTCTCCAGACAATAC---TCTTCGAGTGTAAATATTACTGGTATATGGTTCCAC 75777 ||||||||| ||| ||||| |||| || |||||||| || || |||||||| | Sbjct 31910 TTGAAATTCCCCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGTTCAAA 31854 Query 75778 AGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAA 75837 ||||||||||||| | ||| ||| || || ||||| ||||| ||||| | ||| || Sbjct 31853 GCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATCAACAA 31794 Query 75838 ACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATC 75897 | ||||| | |||| | ||||| || ||||| | | | ||| ||||| |||| Sbjct 31793 AGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCATCGATC 31734 Query 75898 TGATGGT 75904 ||| ||| Sbjct 31733 TGAAGGT 31727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712805394520320