Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq3144 183 3e-41 >seq3144 Length=5517 Score = 183 bits (202), Expect = 3e-41 Identities = 344/499 (69%), Gaps = 10/499 (2%) Strand=Plus/Minus Query 23201 TATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTAC 23260 || ||||||| || ||||||||| || || ||| |||| || |||||||| |||| Sbjct 5033 TACTCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTAC 4974 Query 23261 CCTCTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTT--T 23318 | | ||| || |||||||||||||| ||||| | |||||| | | || | Sbjct 4973 CTTGTAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACA-ATTTTGCT 4915 Query 23319 ACATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATC 23378 || | | | || ||| | ||||| ||||||||||||||||||| ||| |||| Sbjct 4914 CCACCA-AGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATT 4856 Query 23379 ATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGA 23438 ||| ||||| |||| || ||||| | || || ||| ||| || ||| || | Sbjct 4855 CGCGTTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGT 4796 Query 23439 AACAGCATC---TTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATA 23495 ||| || || | |||| || ||| | || || |||| | | || Sbjct 4795 AACCGCTTCCGCTATAATAGCTTCTACAGTTT-TTGTTGG--AGGTCGTGCACGAAGATG 4739 Query 23496 CTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATT 23555 | || || | |||||||||||||||||| | |||||||| | | ||| | ||| || Sbjct 4738 AGTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTT 4679 Query 23556 AGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGA 23615 ||||| |||||||||||||| | ||||| ||| || | |||||| |||| || || | Sbjct 4678 GGAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGC 4619 Query 23616 TCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGC 23675 ||| |||||||| || || |||||||| ||||| || ||||||||| | |||||| | Sbjct 4618 TCCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATGAAGA 4559 Query 23676 ATTATAATCAGAAATCCAT 23694 | | ||| ||||||||| Sbjct 4558 TTCCTTATCGGAAATCCAT 4540 Score = 141 bits (156), Expect = 1e-28 Identities = 171/231 (74%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 23803 TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCA 23862 |||||||| ||||| |||||||| || |||||||| |||||||||||||| ||||| Sbjct 4352 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 4293 Query 23863 GACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTA 23922 | | ||| || |||||| ||| | || |||||||||| || ||||||||||| Sbjct 4292 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 4233 Query 23923 GCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTT--- 23979 || |||||||| || | ||| | ||||| | |||| ||| | | ||| ||| Sbjct 4232 GCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCA-TCGTTAAGTTTATA 4174 Query 23980 -TTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 | ||||||||| ||||| || || | |||||||| ||||| |||||||| Sbjct 4173 CTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAA 4123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521393636746400