Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq352 102 6e-17 seq1364 98.7 7e-16 seq2123 93.3 3e-14 >seq352 Length=65406 Score = 102 bits (112), Expect = 6e-17 Identities = 119/157 (76%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || |||| || || || || |||||||| || |||||||||| ||| | ||||||||| Sbjct 28802 TCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTA 28861 Query 44243 TCCGTTATCTTCTGCTTCAA--TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 || ||||| ||||| || || || |||||| || | ||| || || || | |||| Sbjct 28862 TCTTGAATCTT-TGCTTTAACTTGGTC-TATGGTATCAGAGGACTCAACTTCAAGGGTAA 28919 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || ||||||||||| ||||| |||||||| Sbjct 28920 TTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 28956 Score = 98.7 bits (108), Expect = 7e-16 Identities = 118/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || |||| || || ||||| |||||||| || || ||||||| || | ||||||||| Sbjct 29030 TCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTA 29089 Query 44243 TCCGTTATCTTCTGCTTCAA--TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 || ||||| ||||| || || || |||||| || | ||| || || || | |||| Sbjct 29090 TCTTGAATCTT-TGCTTTAACTTGATC-TATGGTATCAGAGGACTCGACTTCAAGAGTAA 29147 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || ||||||||||| ||||| |||||||| Sbjct 29148 TTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 29184 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 || || || || |||||||| || || ||||||| ||| | |||||| || || ||| Sbjct 29267 TGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCTTGAATC 29326 Query 44252 TTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 ||| || | | ||||||| || | ||| || || || | ||||| || || || Sbjct 29327 TTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCG 29386 Query 44312 GTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| ||||| |||||||| Sbjct 29387 GTGAGGGTCTTGACGAAAATTTGCAT 29412 >seq1364 Length=43964 Score = 98.7 bits (108), Expect = 7e-16 Identities = 166/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| | | | ||| || || || || |||||||||||| |||||||| Sbjct 15929 CATACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATC 15870 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | || | || |||| || || |||||||||||||| || |||||||| | Sbjct 15869 TGACAAGGTA-CGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCG 15811 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA--TGTTCCTATGGTGTCGGCGGA 44283 || | ||||| || || |||||| |||| || || | | ||||| || | ||| Sbjct 15810 GGGGAATGCCTTCTTTGTCTTGAATCTTC-GCTTTAACTTGGT-CAATGGTATCTGAGGA 15753 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||||| || || || || || ||||| ||||| |||||||| Sbjct 15752 CTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 15699 >seq2123 Length=30488 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| || ||| ||||| ||||| ||||| | || || |||| || Sbjct 15269 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCA 15328 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || || || || || | ||| ||||| |||| || | ||||| || || Sbjct 15329 AGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGA 15388 Query 44249 ATCTTCTGCTTCAA--TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || || ||||| || || || || ||||||| ||||| || || | || || |||| Sbjct 15389 ATTTT-TGCTTTAACTTGGTCA-ATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCT 15446 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 |||| || ||||| || ||||||||||||||||| Sbjct 15447 TTCCGGTAAGGGTTTTAACGAAGATTTGCATGAT 15480 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || || ||||||||||| ||||| | || || | || ||| Sbjct 14585 ACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCC 14644 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||||| || || || |||||||| |||||||||| ||| | || | |||| | | Sbjct 14645 AATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATCCCCT-CTTTATCTTG 14703 Query 44249 ATCTTCTGCTTCAA--TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 | || | || || || | | ||||| || | ||||| ||||| | |||||||||| Sbjct 14704 AATTTTGGTTTTAACCTGAT-CAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCT 14762 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || || || || || |||||||| Sbjct 14763 TACCAGTAAGTGTTTTTACAAAAATTTGCAT 14793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359926888243692