Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2123 165 2e-35 seq1318 150 4e-31 seq1364 145 2e-29 seq352 141 2e-28 seq642 91.5 4e-13 seq348 87.8 4e-12 >seq2123 Length=30488 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || || ||||| || |||||||| || || ||| || ||| Sbjct 15474 CAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCCGAC 15415 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | || ||| ||| ||||| |||||||||||||| || || ||||||||| Sbjct 15414 ACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAGCAA 15355 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || ||||| || ||||| || | || ||| | ||||||||| | Sbjct 15354 CGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAACATT 15295 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||| ||||| || ||||| || Sbjct 15294 CAAAAAGAGTCAACTCTTCATCTAGT 15269 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || || || ||||| ||||| ||||| ||| || || Sbjct 14790 CAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCTGAT 14731 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| || ||||| || ||||| || |||||||| || |||||| Sbjct 14730 ACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGGATCCCTCCAGATCAGCAA 14671 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || || | |||||||| | |||||| | ||||||||| || Sbjct 14670 CGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAACATC 14611 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||||||||| || || || || Sbjct 14610 CAAAAAGAATCAACTCTTCACCTCGT 14585 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| || |||||||| || || | || || || || || Sbjct 15018 CAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCCGAT 14959 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| | || ||| ||||||||| ||||||||||| || || || || |||||| Sbjct 14958 ACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAGCAA 14899 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| ||||| || || |||||| | || ||| | || || || | Sbjct 14898 CGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAATATT 14839 Query 178104 CAAAAAGAATCAACACTGCAT 178124 |||||||| |||||||| ||| Sbjct 14838 CAAAAAGAGTCAACACTTCAT 14818 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || ||||| |||||| | || || || ||| || Sbjct 15246 CAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCGGAT 15187 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| | || ||| || ||||| || || || || ||||| || ||||||||| Sbjct 15186 ACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAGCAA 15127 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || ||||| || || |||||| | || ||| |||| || || | Sbjct 15126 CGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAATATT 15067 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||| || || ||||| ||| Sbjct 15066 CAAAAAGAATCCACTCTTCATCTCGTT 15040 >seq1318 Length=24839 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || || ||||| || || | || || ||||| || Sbjct 3855 CAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGCGAT 3914 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| |||| ||||| || |||||||||||||| ||||| || ||| Sbjct 3915 ACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAACAA 3974 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || |||||| | ||||||||| | | ||| ||||||| || | Sbjct 3975 CGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTCCGATTACAATATT 4034 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||||||| | || |||| Sbjct 4035 CAAAAAGAATCAACATTACA-CTTG 4058 >seq1364 Length=43964 Score = 145 bits (160), Expect = 2e-29 Identities = 158/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || ||||| || || || || || || |||||| Sbjct 15702 CAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCAGAT 15761 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| |||||||| ||||||||||| || || ||||| |||||| Sbjct 15762 ACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAGCAA 15821 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| ||||| ||||| | ||||||||| | || |||| | ||||| || | Sbjct 15822 CGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTAC-CTTGTCAGATTACAATAT 15880 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 |||||| || ||||| || ||||| || Sbjct 15881 CCAAAAGGAGTCAACTCTCCATCTCGT 15907 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || ||||| || ||||| || || || || || ||| || || Sbjct 15930 CAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCTGAT 15989 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | ||||| ||||||||| ||||||||||| |||||||| || || ||| Sbjct 15990 ACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAACAA 16049 Query 178044 CGACTTATCTTCGCCGGAAAACAG 178067 || | || || || || |||||| Sbjct 16050 AGATTGATTTTTGCTGGCAAACAG 16073 >seq352 Length=65406 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| || ||||| || || || ||| || Sbjct 28953 CAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCTGAT 28894 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| ||||||||| || || ||||| || ||||| || |||||| Sbjct 28893 ACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAGCAA 28834 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | ||| | | |||||||| | Sbjct 28833 CGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAATATT 28774 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || ||||| || Sbjct 28773 CAAAAAGAATCTACTCTCCATCTCGT 28748 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| || || || || || || ||| || Sbjct 29409 CAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTGAT 29350 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| |||||||| || |||||||| |||||||| || || ||| Sbjct 29349 ACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAACAA 29290 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | || | | |||||||| | Sbjct 29289 CGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAATATT 29230 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||||||||| || ||||| || Sbjct 29229 CAAAAAGAATCAACTCTCCATCTCGT 29204 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || || ||||| ||||| || || || || ||| || Sbjct 29637 CAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCTGAT 29578 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| ||||||||| || |||||||| ||||| || || || ||| Sbjct 29577 ACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAACAA 29518 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | || | | || |||||| | Sbjct 29517 CGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAACATT 29458 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || ||||| || Sbjct 29457 CAAAAAGAATCCACTCTCCATCTCGT 29432 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| || || || || || || ||| || Sbjct 29181 CAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTGAT 29122 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| ||||||||| || || ||||| ||||| || || || ||| Sbjct 29121 ACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAACAA 29062 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| ||||| | |||||||| | ||| | | || ||||| | Sbjct 29061 CGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAATATT 29002 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| |||||||| || ||||| || Sbjct 29001 CAAAAGGAATCAACTCTCCATCTCGT 28976 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || ||||| || ||||| || || || | || Sbjct 29865 CAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAATGAT 29806 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | || ||| ||||||||| || || |||||||| ||||| || || ||| Sbjct 29805 ACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAACAA 29746 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | ||| | | |||||||| | Sbjct 29745 CGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAATATT 29686 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||||||||| || ||||| || Sbjct 29685 CAAAAAGAATCAACTCTCCATCTCGT 29660 >seq642 Length=35260 Score = 91.5 bits (100), Expect = 4e-13 Identities = 152/217 (70%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCAG 177981 ||||||| |||||||| | || |||||||| | | ||| || | || |||| | Sbjct 6443 AAATTTT-GTGAAAACATTGACCGGAAAAACAGTTATCCTAGATTTTGATTCAAGC---G 6498 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || | | ||| ||| | || | |||||||| || ||||| ||||||| Sbjct 6499 ACACTATTGATATGATTAAATCTAAGGTCGAGAAAAAAGAAGGCATTCCTCCTGACCAGC 6558 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| |||| || || || || || | || ||||||| ||| | | |||||||| Sbjct 6559 AACGTATTATTTTTGCTGGTAAGCAATTGGAGGATGGAAAAACTTTATCAGATTATAATA 6618 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | ||| |||| || || |||||||||| | ||||| Sbjct 6619 TTCAAGAAGAGTCTACGTTGCATCTTGTACTTAGACT 6655 >seq348 Length=51996 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||| | |||||||||||||| ||||| || || ||||| ||||| || || || | Sbjct 39720 AAGATTTATGACAAAGAAGGAATTCCTCCTGATCAACAACGCCTTATTTTTGCTGGCACG 39661 Query 178065 CAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 || | ||||| ||| | || |||| | |||||| | |||||||||| | ||| | || Sbjct 39660 CAATTAGAAGAAGGACGTAC-CTTGTCAGATTATTATATCCAAAAAGAGTGCACAATTCA 39602 Query 178124 TCTTGTTTTGAGACT 178138 |||||| | ||||| Sbjct 39601 TCTTGTACTTAGACT 39587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203507939460344