Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2123 104 2e-17 seq352 84.2 2e-11 >seq2123 Length=30488 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || ||||| || || ||| || ||||||||||| || || Sbjct 15251 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 15310 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || || || ||||| ||||| || || || || ||||| | |||| Sbjct 15311 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 15370 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||| | ||| ||||||||| ||| | | | ||||||| || || || Sbjct 15371 ATTCCTTCTTTGT-CTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAAC 15429 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || || || || || || ||||| || |||||| Sbjct 15430 TTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATG 15478 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||| || ||| || || ||||| || |||||||| Sbjct 15023 CCGCCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAA 15082 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || || || || || ||||| || || || || ||||| | ||| Sbjct 15083 AGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGG 15142 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| || ||| |||| | || || | | | || || ||||| || Sbjct 15143 ATACCCTCCTTATCT-TGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTAC 15201 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||| || || || ||||||||||| || ||||| Sbjct 15202 GTCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 15249 >seq352 Length=65406 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || | || ||| | || ||||| || ||| || || |||||||||||||| || Sbjct 29414 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 29473 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || | || || || ||||| |||| ||| ||||| || | ||| Sbjct 29474 AATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGG 29533 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || ||| | ||| | ||||||| ||| | | | || || ||||| || Sbjct 29534 ATAC-CTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTAC 29592 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || |||||||| |||||||| || |||||||| ||||| Sbjct 29593 TTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 29640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462220346091200