Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1785 205 2e-47 seq1026 104 5e-17 seq834 100 6e-16 seq1838 93.3 9e-14 >seq1785 Length=38701 Score = 205 bits (226), Expect = 2e-47 Identities = 680/1050 (65%), Gaps = 42/1050 (4%) Strand=Plus/Plus Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055 |||||| ||| | |||||||| |||| |||| |||||| || |||| || || | Sbjct 1542 GTCTTCTCCGTACTGGTAACGCCAGCGGATGTACTCGTTGGGAGTTTTGTCCAGGTGCTG 1601 Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115 ||||| ||||||||| || || || || ||||| || | ||| | || || |||||||| Sbjct 1602 CTCGACGTGGTGGAAGGCGTGTTGGGCGACGTAGGCGACACGGAGGTTGGGGTGCTTCCA 1661 Query 319116 AACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCC 319175 ||| ||| |||||| | | || || | ||||||||||||||| ||| || Sbjct 1662 GACATCACCTTCGGTGGCGATGAGCTCACCGGTCAAGACCTTAATGAGGGTGGATTTACC 1721 Query 319176 CGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATTCACGTT 319235 |||||||| || | || ||| | |||||| || || ||| | | ||| Sbjct 1722 GGCACCGTTGGGACCGATGACGGCGACGCGGGAGTTGAGGGAGCATTGGAGGGTGATGTT 1781 Query 319236 GTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AGCTTCATGA 319294 || || ||| | || || || || |||| || | || | | ||| | || Sbjct 1782 GTGAAGGATCTGCTTGGTGGTGCCTTCGTAGGTGAAGTTGACGC-GCATCATCTTAAGGA 1840 Query 319295 TGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGG 319354 | || |||||| || |||||||||| ||||| || ||||| |||||||| || || Sbjct 1841 TAGCCTTGTCCTTAGACTTGATACCCTCAAGGAATCCAGGCTCAGGGAACTTGAACTTGA 1900 Query 319355 TCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGG 319414 || || ||| || ||||||| | | || || || || ||||||| || Sbjct 1901 ACTCAGTGGCGGAGAGTTCGTAGTAGGCCTTGGCCTCAGGGCGGGCCTCGACGAACTTGG 1960 Query 319415 ACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGC 319474 ||| || |||||||| ||| ||||| |||| ||||| ||||| || ||||| Sbjct 1961 ACAAGTTACCCTTGTAGCGCTTAAGCTTACGGTTC---TCGTAGTGGATGATGTTGGTGC 2017 Query 319475 AAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGT 319534 | || ||| ||||| ||||||||||| || || |||| | | | |||| | || Sbjct 2018 AGACTTTGTCAAGGAAGCCGGAGTCGTGGGAGACGATCATGGAGGTGACGTTGGGGATGT 2077 Query 319535 TGATCAGGTATTCAATCAACCACCTCACG---TTAGACACAGAAAGATGGTTGGTCGGCT 319591 || | ||||| || | | ||| ||| |||| | ||| |||||||| || | Sbjct 2078 TGTTGAGGTAGTCGACGAGCCATTGGACGTTCTTAGGGTC--CAAG-TGGTTGGTGGGTT 2134 Query 319592 CGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTT 319651 |||| || || || | | |||||| ||||||| ||||| ||||| |||| ||||| | Sbjct 2135 CGTCGAGGAGGAGAATGTCGGCGTTCTGGAGCATGGCACGCGCAAGCTCGAGCTTCATCT 2194 Query 319652 TCCACCCTCC------GGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAATATCAAAGC 319705 |||| || || ||||| ||| |||| ||| ||||| |||||| | Sbjct 2195 TCCAACCACCAGAGAGGGAAACGACGTT--CTGGGCGAGA----CGCTCGTCATCAAAAC 2248 Query 319706 CAACCGATTCTAGAGTAGTTACGATCT-----TTTCACGAGACCAAATGTTTTCCTTTAC 319760 | || |||| || || || | | ||| || | || | ||| || Sbjct 2249 CGACTGATTTGAGGGTCGTGATGGTCTCGTCCTTCCTCG-CAGCAAGGGT---------- 2297 Query 319761 TTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCCGTCGAGATC 319820 | || ||| ||| |||| | | | | | || | | | | ||| | Sbjct 2298 GGGGTCGGAGAGGGC---GAACTCAAGAACGGTCATTTCAGTTTGGTCGGCCTGGAGGTT 2354 Query 319821 GTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGGCCGTT 319880 ||| || ||| | | || || | |||||||| | ||||| ||||| | ||||||||| Sbjct 2355 GTGCTCGACGAAGACGGTCTTAAGGACATCCGCGGGAGGGAAGCCTTCGACCTGGCCGTT 2414 Query 319881 CACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCG 319940 | || |||||||| ||||| | ||||| | ||||| || || || ||||||||||| Sbjct 2415 GGCGATGGCGCGCATGAGGGTGGTCTTACCGGTACCGTTGGGACCGCAAAGACCGTAGCG 2474 Query 319941 GTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACCATATGCCAG 320000 | || || | ||| || | |||||||| || | || | ||||| || || || Sbjct 2475 TTGACCACGGTGGAGGCGGAGCTTGGTGTTGTTGAGCAAGATCATACCACCGTAAGCGAG 2534 Query 320001 AGAAAATTCACAATCACACAGATCCTCACC 320030 ||| || || || | || || |||||||| Sbjct 2535 AGAGAACTCGCAGTTGCAAAGCTCCTCACC 2564 >seq1026 Length=25707 Score = 104 bits (114), Expect = 5e-17 Identities = 310/471 (66%), Gaps = 8/471 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || || || ||||||||||| | | ||||| ||||| | || ||||| || Sbjct 12809 TTCGCAGAACGTCTCGTCGCTTTCGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTT- 12751 Query 230233 TGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGA 230291 ||| ||||||| |||||| ||| ||| ||||||| |||||| | | || ||||| Sbjct 12750 TGCTTCCATCTTCTGGCTGAAGAAGCGAGGCATGATGCCCGGCCTCACTTTCTCCAACGA 12691 Query 230292 GTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAAGC 230350 ||||| || ||||| || ||||| | | || || || | | | || | | Sbjct 12690 ACTCATCTCCCGTGACGAAGGCCTCCA-CTGCGATTTTGCTTGCCTCCTCTTCACACAAC 12632 Query 230351 TCCAGAACAAGCTACCATTC--GAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 || | | |||| || || || || || |||||||| || ||||| || | | Sbjct 12631 TCAACCAAAAGC--CCGCTCATGAAACCGTTCTCCAAATCATCACCGAAGCGGTGGGCAT 12574 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468 |||| | || ||| | |||||| | || | ||| || ||||||||| | | || Sbjct 12573 CGAACAAGAATTCCTCACCGACGCTCTCCCCGTTGCCCTCATCGGCATGAACTCCGTCCT 12514 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | | ||||||||| ||||| || ||||| | | || || | || | | || Sbjct 12513 CATGTGCCGGTACATCGAGTTCGTCGCTGACCGTCTCCTCGTCGCCTTGGGATTCCCCAA 12454 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||| | | || ||||||| || |||||| | ||||| | || || ||||| Sbjct 12453 GCACTACAACGCCGAAAATCCCTTTGACTTCATGGAGTTGATTTCCTTGCAGGGCAAGAC 12394 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 ||||||||| || ||| ||| | || ||||| | | | || || ||||| Sbjct 12393 CAACTTCTTTGAGAAGAAGGTCGGGGAGTATCAAAAGGCCGGCGTCATGAA 12343 >seq834 Length=203524 Score = 100 bits (110), Expect = 6e-16 Identities = 173/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 282507 TCGGTCATGATCATCACATGACCGTATCTCAGAGAAGA--AGTGTCTTTGTACACTTTAC 282564 || ||||||||||||| ||| ||||| | || || | | ||| || ||||| | Sbjct 45234 TCAGTCATGATCATCAAATGGCCGTAACGCA-AGCTGTCCACATTCTCA-TAAACTTTTC 45291 Query 282565 CGGTTTGAAGGCCCAAAATTTGTTTGAGCGCGGTGATTTCTTCGTTCTTTGTGATACTTG 282624 || || | |||| |||||||||| |||| |||||||| | || ||||| | Sbjct 45292 CGTGCTGCAACCCCATGATTTGTTTGATCGCGTTGATTTCTCCATTTGCAGTGATTTGAG 45351 Query 282625 CCACAGATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCATATCTCT 282684 | || || || ||||| || |||||||| ||||| ||||| || || || | | | Sbjct 45352 CATGAGTAGCTTCCCGAACATTGAGCAACTTTCCGCGCAGAGGGAACACTCCGAAATTGT 45411 Query 282685 CGCGACCGACCACGGACAGTCCTGCAATTGCAAGTGTTGCT-GCGGAATCTCCCTCCGTC 282743 | || |||||||| ||||| || | |||||| ||| | | ||||||||||| || ||| Sbjct 45412 CCCGTCCGACCACCGACAGGCCGGAAATTGCT-GTGGTCTTAGCGGAATCTCCTTCGGTC 45470 Query 282744 AAGAT 282748 ||||| Sbjct 45471 AAGAT 45475 >seq1838 Length=37140 Score = 93.3 bits (102), Expect = 9e-14 Identities = 178/262 (68%), Gaps = 3/262 (1%) Strand=Plus/Minus Query 319409 ACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAG 319468 |||| || || || |||||||| | | || |||| || | || ||||| || ||| Sbjct 6244 ACTCAGAAAGGTTCCCCTTGTAATACGCCAACTTT---TTCCGCTCATAATGAATGATAT 6188 Query 319469 AGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCT 319528 ||||| ||| ||| || || ||||| |||||||||||||| | ||| | || || Sbjct 6187 CAGTGCACACATTGTCCAGAAAGCCGGAATCGTGTGACACAATTAAAGACGTCATGTTCT 6128 Query 319529 TAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCG 319588 | || | | || | | |||||| ||||| | ||| | ||||||||| | Sbjct 6127 TCTGGCTCAACAAAAACTGCTCCAACCATGCGACGTTCGTAACATCCAAATGGTTGGTAG 6068 Query 319589 GCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCA 319648 | ||||| ||||| || | | ||||| ||||| ||||| ||||| | | |||| Sbjct 6067 GTTCGTCGAGAAGAAGAATATCCGCGTTATACAGCATAGCACGAGCAAGCTCCAACTTCA 6008 Query 319649 TTTTCCACCCTCCGGAAAGAGT 319670 | ||||| || |||||||| || Sbjct 6007 TCTTCCATCCACCGGAAAGCGT 5986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057798058849820