Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1026 127 2e-24 >seq1026 Length=25707 Score = 127 bits (140), Expect = 2e-24 Identities = 226/327 (69%), Gaps = 6/327 (2%) Strand=Plus/Plus Query 16037 TCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACC 16096 || || || || || || || | ||||| | | || | || || || || || || Sbjct 12484 TCAGCGACGAACTCGATGTACCGGCACATGAGGACGGAGTTCATGCCGATGAGGGCAACG 12543 Query 16097 GGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTG 16156 || ||||| | || | |||| |||||| || | |||||||| | ||||| | | Sbjct 12544 GGGAGAGCGTCGGTGAGGAATTCTTGTTCGATGCCCACCGCTTCGGTGATGATTTGGA-- 12601 Query 16157 GCTCGTGTTTCA---GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCG 16213 | || |||||| | || | ||||| || ||| | || | || || || || ||| Sbjct 12602 GAACG-GTTTCATGAGCGGGCTTTTGGTTGAGTTGTGTGAAGAGGAGGCAAGCAAAATCG 12660 Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 || || || |||||||| | | ||| ||||||||||| ||||| | || ||||| | Sbjct 12661 CAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGGCCGGGCATCATG 12720 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 ||||| ||||| | |||||| || | |||||| || || || ||||| ||||||||||| Sbjct 12721 CCTCGCTTCTTCAGCCAGAAGATGGAAGCAAAGGAGCCGGAGAAGAAGATACCCTCAACT 12780 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCG 16360 | || ||||||| | ||||| ||| Sbjct 12781 GCGGCGAAAGCGACGAGACGTTCTGCG 12807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511402164410480