Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq972 159 4e-34 seq1026 109 7e-19 seq736 91.5 2e-13 >seq972 Length=266462 Score = 159 bits (176), Expect = 4e-34 Identities = 468/717 (65%), Gaps = 8/717 (1%) Strand=Plus/Minus Query 54133 ATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTG 54192 ||| | |||||| || ||||| || || | | | | |||||||| || || || ||||| Sbjct 234416 ATCCGCATGCCAAGGCTCCAAATAAATAGCAAAAGCACCAGGCCGCTTATTCCCACCCTG 234357 Query 54193 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGC 54252 || | || | || || || || || || |||||||| || | ||| || ||||| Sbjct 234356 GTCAACATACCGCGCAGTATTGTTGTATACCCTCAACATGGGCACAATCCCGTTGGAGTA 234297 Query 54253 ACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA--CTAATTGATAGACCT 54310 || || || || | || || ||| || ||||| ||| | ||| ||| || Sbjct 234296 CCCGTTCGTGCCAGCAATGTACGATCCCAAAGCGCGAATCTTATGCACATTAATA--CCG 234239 Query 54311 ATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 54370 || || || || |||| ||||| | ||||| ||| | || || || ||||| || Sbjct 234238 ATACCGCCAGCGGTTTTGGAGATCATCGCGCAAGTTTTCAGAGTTTCGTAAATGCCGTCG 234179 Query 54371 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 54430 || || ||| |||| | || | |||||| || | ||| | || || || Sbjct 234178 ATGGAGTCGTCCTTCATCGTGAGCAAGAAACAGGAGGAGAGTTGCGGGTGAGGGGTGCCG 234119 Query 54431 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 54490 ||||| || | ||| || || ||||| || || | ||||| || | || | ||| || Sbjct 234118 GCATTGAAGAGGGTGGGTGATGCGTGGGTGAAGTACTTTTCGGACATGAGTTCGTATGTT 234059 Query 54491 TCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 54550 ||||| || | |||| || |||||| || || || |||||||| | ||||||| Sbjct 234058 TCGATGGCGGCATCTACGTCGTCACCATGAATACCGACAGCAACACGCATGAGCATGTGC 233999 Query 54551 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTA 54610 ||||| ||||| ||||||||||||| || || | |||||| ||| | || || Sbjct 233998 TGAGGCCTTTCTGCGATCTTGTTGTTGATGCGGAGGAGGTAGGAGCGTTCGAGGGTCTTG 233939 Query 54611 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG--TTTAT 54668 || || || |||||||| ||||| || ||||| || || | |||||||| || | Sbjct 233938 AAGCCGAAGTAGTTGTAGTTGAAGTCGCGGTCGTAGATGATGGCGGAGTTGAGACGTTCT 233879 Query 54669 CCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCAT 54728 | | ||||| | || | ||| | || || || || || || || || Sbjct 233878 GCGTTCTTTTGT--ATGGAGTCGAAGGTCTCTTTGGAGATCATGGGGGAGTGCTTGCCGG 233821 Query 54729 TTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTT 54788 |||| || |||| ||||| | || || | | |||| ||| | || || || | Sbjct 233820 TTTTGGGGTTGATGTAGTTGTACAAGTCTTCCGATACTTGGGAAAACTGCTTCTTGGTCT 233761 Query 54789 CTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTT 54845 | ||||| | || || | ||| || | ||| || || |||||||| || || |||| Sbjct 233760 CCTTGTGCACGTTCGAGATGGCAATGCGAGCAGCAAGGATGGCATAGTCTGGGTGTT 233704 >seq1026 Length=25707 Score = 109 bits (120), Expect = 7e-19 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || ||||||||||| || || ||||| | || | ||||||||| || ||||| Sbjct 12649 CAAGCAAAATCGCAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGG 12708 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| | ||| ||||| || ||||| || ||||| ||||| || || || ||||| Sbjct 12709 CCGGGCATCATGCCTCGCTTCTTCAGCCAGAAGATGGAAGCAAAGGAGCCGGAGAAGAAG 12768 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGT 24311 || || || ||||| || || || | || | |||| | | ||| | |||| | Sbjct 12769 ATACCCTCAACTGCGGCGAAAGCGACGAGACGTTCTGCGAAGACGGAGTCCTTGTCTTCG 12828 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTT 24340 ||||| ||||||| ||||||||||| Sbjct 12829 ATCCATCGAAGAGCCCAGTCGGCCTTCTT 12857 >seq736 Length=77482 Score = 91.5 bits (100), Expect = 2e-13 Identities = 170/244 (70%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 |||||| ||||||||| ||||| | | ||| ||||||| || || | || || | Sbjct 55987 CATTTCGCTATGAATGTTCTCAATCATCGTCTGATATCCGTAAAAGCACCGTGCTTCTGC 56046 Query 24488 AATCTGTACTTCTATACAAAATCGT-TCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 | |||| || || | | ||||| | | | ||||||||||| || || ||||| | Sbjct 56047 ATTCTGAACCTCGTTCGAGAATCGCATATTC-AAATTTTCATTGACAATGCCGTCCGATG 56105 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGTGTTAGTTTATT- 24604 | ||||| |||||||| ||||| ||||||| ||| | |||| ||||| | || || || Sbjct 56106 CGGCAAAGAACGCCAAGACATGACTTATAAAGTATCTCTCGTCCTGGT-TGAGCTTGTTC 56164 Query 24605 --CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 ||| || || || || | | ||| || ||||| | ||||| || || ||||| Sbjct 56165 TCCCAGTCGCCTATGTCCTTCGCAAGATCGACCTCTTCAGCGGTCCAGAACGAAGCCTCA 56224 Query 24663 GCCT 24666 |||| Sbjct 56225 GCCT 56228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593707395210720