Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1416 95.1 1e-14 >seq1416 Length=13108 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | ||||| ||||| || ||||| ||||| | Sbjct 8290 CCACCACGGAGACGGAGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 8349 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || |||| || || |||||||| || | || || | |||||||| ||| Sbjct 8350 AGGGTGCGGCCGTCTTCAAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGGGGG 8409 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||||| | ||| || || || |||| Sbjct 8410 ATTCCTTCCTTGTCCTGGATCTTCGTCTTCACGTTTTCGATCGTGTCGGAGGACTCCACC 8469 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| || || | |||||||| || |||||||| Sbjct 8470 TCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAGATTTGCAT 8516 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| |||||||| ||||| | || || | | ||||||| ||| || ||| Sbjct 8092 GTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGACCATCCTCCAACTGCTTCCCC 8151 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | ||||| || ||| | || |||||||| |||||| ||| Sbjct 8152 GCAAAGATGAGACGTTGCTGATCAGGGGGAATACCCTCCTTGTCTTGGATCTTCGTTTTG 8211 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| ||| || || |||| ||| | || || ||||||||||| | || Sbjct 8212 ACGTTCTCGATAGTGTCGGAGGACTCCACTTCGAGAGTGATCGTCTTGCCGGTGAGGGTC 8271 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| |||||||| Sbjct 8272 TTCACAAAGATTTGCAT 8288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422249350012424