Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1026 165 8e-36 seq1416 159 4e-34 seq999 136 4e-27 seq1169 107 2e-18 seq736 89.7 5e-13 >seq1026 Length=25707 Score = 165 bits (182), Expect = 8e-36 Identities = 206/282 (73%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| ||||||||||||||||| || || |||||||| | || || || ||||| ||| Sbjct 13263 TGGCAAATGTACAAAAAGGCCGAAGCTTCTTTCTGGACTGCTGAAGAAGTCGACCTTTCC 13204 Query 116699 AAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 |||||| | ||||||||| || | || ||| |||| || | |||||| | | Sbjct 13203 AAGGACCTGGTCGACTGGGAAAACCGTCTCAATGACGACGAACGTTACTTCATCTCCCGC 13144 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || || ||||| ||||| || ||||| ||||||||||| || || |||||||| ||| Sbjct 13143 GTCCTTGCCTTCTTCGCTGCGTCTGACGGTATCGTCAACGAAAACCTCGTCGAGCGCTTC 13084 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 | || || ||| | | || || || |||||||| |||||||||||| || ||| Sbjct 13083 AGCAATGAAGTCCAGATCCCTGAAGCCCGCTGCTTCTATGGCTTTCAGATCATGATTGAG 13024 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||| | ||| |||||||| ||| | | |||||||| ||| Sbjct 13023 AACATTCACAGTGAAATGTACTCGCTCTTGATCGACACCTAC 12982 Score = 161 bits (178), Expect = 1e-34 Identities = 311/456 (68%), Gaps = 2/456 (0%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| || || ||||||| | || || ||| ||||| || || | Sbjct 12856 AGAAGGCCGACTGGGCTCTTCGATGGATCGAAGACAAGGACTCCGTCTTCGCAGAACGTC 12797 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || || ||||| || || ||||| ||||||| || ||| || || |||| || | Sbjct 12796 TCGTCGCTTTCGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTTTGCTTCCATCTTCT 12737 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| || ||| | ||||||||||| |||||| |||||| ||||||||| | | Sbjct 12736 GGCTGAAGAAGCGAGGCATGATGCCCGGCCTCACTTTCTCCAACGAACTCATCTCCCGTG 12677 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGC-AGCGACCG 117220 |||| || || || ||||| ||||| || | || |||| || | | | | ||| Sbjct 12676 ACGAAGGCCTCCACTGCGATTTTGCTTGCCTCCTCTTCACACAACTCAACCAAAAGCCCG 12617 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 | | | ||| | ||| ||||||| ||||| | |||||| || |||||| Sbjct 12616 CTCATGAAAC-CGTTCTCCAAATCATCACCGAAGCGGTGGGCATCGAACAAGAATTCCTC 12558 Query 117281 ACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340 ||||| || || || || || | || | || | || |||| | |||||| Sbjct 12557 ACCGACGCTCTCCCCGTTGCCCTCATCGGCATGAACTCCGTCCTCATGTGCCGGTACATC 12498 Query 117341 GAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCC 117400 ||||||||||| ||| | || || ||| ||| | |||||||||||||| | Sbjct 12497 GAGTTCGTCGCTGACCGTCTCCTCGTCGCCTTGGGATTCCCCAAGCACTACAACGCCGAA 12438 Query 117401 AACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436 || || | ||||| ||| | | || |||||| || Sbjct 12437 AATCCCTTTGACTTCATGGAGTTGATTTCCTTGCAG 12402 >seq1416 Length=13108 Score = 159 bits (176), Expect = 4e-34 Identities = 163/210 (78%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| |||||||| || || |||||| | || || || || || Sbjct 8516 ATGCAAATCTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCCTCC 8457 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | ||| || || | ||||| || || |||||| | ||||| Sbjct 8456 GACACGATCGAAAACG-TGAAGACGAAGATCCAGGACAAGGAAGGAATCCCCCCCGACCA 8398 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||| |||||||| || || |||| ||||||||| ||||||||| Sbjct 8397 GCAACGTCTCATCTTCGCCGGCAAACAACTTGAAGACGGCCGCACCCTCTCCGACTACAA 8338 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || ||||| || Sbjct 8337 CATCCAGAAGGAATCCACCCTCCATCTCGT 8308 Score = 129 bits (142), Expect = 6e-25 Identities = 157/216 (73%), Gaps = 7/216 (3%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCA-------TCACCGTCGACGTCGA 40742 |||||||| ||||| |||||||||||||| |||| ||||| | || ||||| Sbjct 8751 ATGCAAATCTTCGTCAAAACGCTCACGGGAAAAANNNNNNNNNNTCACCCTGGAGGTCGA 8692 Query 40743 AGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGC 40802 | | | |||| | | | | | ||| || || | ||||| ||||| ||||| | Sbjct 8691 ATCGTCGGACACCATCGAGAATGTGAAGACGAAGATCCAGGACAAGGAGGGTATCCCGCC 8632 Query 40803 GGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 40862 ||||||||||| ||||||| ||| |||||||| || || |||| ||||| ||| ||| Sbjct 8631 CGACCAGCAACGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACTCTCTCCGA 8572 Query 40863 CTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| ||||| |||| || || || || Sbjct 8571 CTACAACATCCAAAAGGAATCCACCCTTCACCTCGT 8536 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| ||||| || ||||| |||| || || || || Sbjct 8288 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACTCTCGAAGTGGAGTCCTCC 8229 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||| || || | ||||| ||||| || ||| | || || Sbjct 8228 GACACTATCGAGAACG-TCAAAACGAAGATCCAAGACAAGGAGGGTATTCCCCCTGATCA 8170 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||||| || ||| |||| || | || || ||| ||||||||| Sbjct 8169 GCAACGTCTCATCTTTGCGGGGAAGCAGTTGGAGGATGGTCGTACGCTCTCCGACTACAA 8110 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||| ||||||||| | || || || || ||| Sbjct 8109 CATTCAGAAGGAGTCGACCCTCCACCTCGTG 8079 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| |||||||| | || ||||| | || Sbjct 9069 ATGCAAATCTTCGTGAAGACCCTTACTGGCAAGACCATCACGTTGGAGGTCGAGTCTTCC 9010 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| ||||| ||||| ||||| | |||||| Sbjct 9009 GACACCATCGAGAATGTCAAGACCAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAG 8950 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCAC 40853 ||||| ||||||| ||| ||||| ||||| || |||| ||||| Sbjct 8949 CAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCAC 8906 Score = 102 bits (112), Expect = 8e-17 Identities = 128/173 (74%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 || ||||||||| || || || || | || ||||| |||||||| |||| |||||| | Sbjct 9450 AACAATGCAAATCTTTGTGAAGACTTTGACCGGCAAGACCATCACGCTCGAGGTCGAATC 9391 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 |||||| | | |||| |||| || |||| ||||| || ||||| ||| | | Sbjct 9390 TTCCGACACGATCGAGAACG-TCAAAACCAAGATTCAGGACAAGGAAGGCATTCCCCCTG 9332 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTC 40857 |||||||||| ||||||| ||| || || ||||| || |||| || |||||| Sbjct 9331 ACCAGCAACGTCTCATCTTCGCCGGGAAGCAGCTTGAGGACGGTCGTACCCTC 9279 >seq999 Length=50871 Score = 136 bits (150), Expect = 4e-27 Identities = 158/210 (75%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 || ||||| ||||| |||||||||||||| || || ||| | || | || || || Sbjct 18155 ATACAAATCTTCGTCAAAACGCTCACGGGAAAGACAATCC---TTGAGATGGAGACCTCC 18099 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | ||| ||||| | ||||||| ||||| ||| | ||||| Sbjct 18098 GACACGATCGAAAACG-TGAAGACGAAAATCCAGAACAAAGAAGGCATTCCCCCTGACCA 18040 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||| |||||||| || || ||||| ||||| ||| ||||||||| Sbjct 18039 GCAACGTCTCATCTTCGCCGGCAAACAACTCGAGGACGACCGCACTCTCTCCGACTACAA 17980 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| ||||| |||| || || || || Sbjct 17979 CATCCAAAAGGAATCCACCCTTCACCTCGT 17950 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 40692 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 |||||| ||||| || || || || ||||| |||||||| | || ||||| | |||| Sbjct 19501 GCAAATCTTCGTGAAGACCCTTACTGGCAAGACCATCACGTTGGAGGTCGAGTCTTCCGA 19442 Query 40752 CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 || | | | | ||||| || |||| ||||| ||||| ||||| | |||||||| Sbjct 19441 CACCATCGAGAATGTCAAGACCAAGATTCAGGACAACGAGGGTATCCCTCCCGACCAGCA 19382 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCAC 40853 ||| ||||||| ||| ||||| ||||| || |||| ||||| Sbjct 19381 ACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCAC 19340 >seq1169 Length=14909 Score = 107 bits (118), Expect = 2e-18 Identities = 125/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| |||||||||||||| || || |||||| | || || || | || Sbjct 5545 ATGCAAATCTTCGTCAAAACGCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCGTCC 5604 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| || || | ||||| |||||||| ||| | ||||| Sbjct 5605 GACACCATCGAGAACG-TCAAAACGAAGATCCAAGACAAGGAGGGCATTCCCCCTGACCA 5663 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854 ||||| ||||||| ||| |||| ||||| || |||| |||||| Sbjct 5664 GCAACATCTCATCTTCGCCAGCAAGCAGCTCGAGGACGGTCGCACC 5709 >seq736 Length=77482 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/213 (69%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| ||||| ||||||||||||| || ||||| || || | ||||||| |||||| Sbjct 56228 AGGCTGAGGCTTCGTTCTGGACCGCTGAAGAGGTCGATCTTGCGAAGGACATAGGCGACT 56169 Query 116715 GGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCG 116771 ||||| | | ||| | ||||| | | || || | || || |||| || || | Sbjct 56168 GGGAGAACAAGCTCAACCAGGACGAGAGATACTTTATAAGTCATGTCTTGGCGTTCTTTG 56109 Query 116772 CCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGG 116831 |||| |||||||| ||||| || ||| || ||| ||| | | ||||| ||| Sbjct 56108 CCGCATCGGACGGCATTGTCAATGAAAATTTGAATATGCGATTCTCGAACGAGGTTCAGA 56049 Query 116832 TGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGA 116864 || || || |||||||| ||||| | ||||| Sbjct 56048 ATGCAGAAGCACGGTGCTTTTACGGATATCAGA 56016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515206873380640