Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1416 113 4e-20 seq999 89.7 4e-13 seq1169 87.8 2e-12 seq986 86.0 5e-12 >seq1416 Length=13108 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || ||||||||||| ||| | || || |||||| Sbjct 8079 CACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGACCATCCTC 8138 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || || |||||||||| |||||||| || || || |||||||||||| Sbjct 8139 CAACTGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGGGGAATACCCTCCTTGTCTTG 8198 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||| || | |||| ||||| | | ||| || |||| || | ||| || Sbjct 8199 GATCTTCGTTTTGACGTTCTCGATAGTGTCGGAGGACTCCACTTCGAGAGTGATCGTCTT 8258 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || || ||||| || ||||| Sbjct 8259 GCCGGTGAGGGTCTTCACAAAGATTTGCAT 8288 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/206 (71%), Gaps = 11/206 (5%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || ||||| |||||||| ||| | |||||| |||||||| ||||| || Sbjct 8548 GTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCGAGTTGTTTGCCG 8607 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGT-T 118659 ||| |||||||||| ||||| ||||| || || |||||||||| ||| | | || || | Sbjct 8608 GCGAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGA--TCTTCGTCT 8665 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA-------CCGTTTTGCCG 118712 | || | |||| |||||||| |||||||| | ||| | |||| || Sbjct 8666 TCACATTCTCGATGGTGTCCGACGATTCGACCTCCAGGGTGANNNNNNNNNNTTTTTCCC 8725 Query 118713 GTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || || ||||| Sbjct 8726 GTGAGCGTTTTGACGAAGATTTGCAT 8751 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || |||||| ||||||||||| || || ||| |||||||||| ||||| ||||| || Sbjct 8902 CAAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGG 8961 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| ||| || || || | |||| |||||| | |||||| Sbjct 8962 GATACCCTCCTTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGAC 9021 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | || ||||| || || || || || || || ||||| Sbjct 9022 CTCCAACGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCAT 9069 >seq999 Length=50871 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || |||||| ||||||||||| || || ||| |||||||||| ||||| |||||||| Sbjct 19336 CAAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGAGG 19395 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||| ||||| ||| || || || | |||| |||||| | |||||| Sbjct 19396 GATACCCTCGTTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGAC 19455 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| | || | || ||||| || || || || || || || ||| || Sbjct 19456 CTCCAACGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCTTG 19504 >seq1169 Length=14909 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||||||||| || | ||| |||||||| | ||||| || || || |||||||||||| Sbjct 5699 TCCTCGAGCTGCTTGCTGGCGAAGATGAGATGTTGCTGGTCAGGGGGAATGCCCTCCTTG 5640 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 ||| || || ||| || | |||| |||||| | ||| ||||| | ||| | Sbjct 5639 TCTTGGATCTTCGTTTTGACGTTCTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATT 5580 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||| || || || |||||| Sbjct 5579 GTCTTCCCCGTGAGCGTTTTGACGAAGATTTGCATG 5544 >seq986 Length=59218 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||||||||| || || ||| |||| ||||||||||| || || || || || |||||| Sbjct 6326 TCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATTCCTTCCTTG 6267 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || ||| || || || | || | |||||| | ||| ||||||| ||| | Sbjct 6266 TCCTGAATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATA 6207 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || ||||| || || || || || || || ||||||| Sbjct 6206 GTCTTGCCCGTAAGGGTCTTAACGAAGATTTGCATGG 6170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433820280092488