Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1416 104 2e-17 >seq1416 Length=13108 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || || || || || | ||||| ||||| | || || ||||| |||||||||||| Sbjct 8059 AACCCACCACGGAGACGAAGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCG 8118 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 || ||| ||| | || ||||||||||| || || || ||||| || ||||| || | Sbjct 8119 GAGAGCGTACGACCATCCTCCAACTGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGG 8178 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | ||||||||| ||||| || | | | || | |||| || || Sbjct 8179 GGAATACCCTCCTTGTCTTGGATCTTCGTTTTGACGTTCTCGATAGTGTCGGAGGACTCC 8238 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | ||||| || ||||||||||| || ||||||||||| ||||| Sbjct 8239 ACTTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 8288 Score = 96.9 bits (106), Expect = 2e-15 Identities = 118/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 34233 CGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCT 34292 |||| || | |||||| || ||||| ||||| || |||||||| ||| | || |||| Sbjct 9290 CGTCCTCAAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCCT 9349 Query 34293 TGTCGGCTATCTTTTGCTTTAGATCGGCT--ATCGAATCGGTCGATTCGACGTCCACCGT 34350 |||| ||||| | ||| || || |||| |||| |||||||| || | ||| Sbjct 9350 TGTCCTGAATCTT--GGTTTTGACGTTCTCGATCGTGTCGGAAGATTCGACCTCGAGCGT 9407 Query 34351 GATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||| |||||||| | ||| ||||||||||| ||||| Sbjct 9408 GATGGTCTTGCCGGTCAAAGTCTTCACAAAGATTTGCAT 9446 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||||||||| || ||| |||| || | || ||||| ||||| Sbjct 8325 TTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGTTGTTTGCCGGCGAA 8384 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| || ||||||||| ||| | | |||||||| ||||| ||| | | Sbjct 8385 GATGAGACGTTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGGATCTTCGTCTTCACGTT 8444 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | |||| |||| || || || || | ||||| || || || ||||| ||||| || Sbjct 8445 TTCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGAC 8504 Query 34378 AAAGATCTGCAT 34389 ||||| ||||| Sbjct 8505 GAAGATTTGCAT 8516 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/234 (68%), Gaps = 7/234 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || ||| || || |||||||||||||| Sbjct 8518 CCGCCGCGAAGACGGAGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAG 8577 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | || ||||| ||||| ||||| || ||||||||| || Sbjct 8578 AGAGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGG 8637 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | || | || | ||||||||| Sbjct 8638 ATACCCTCCTTGTCCTGGATCTTCGTCTTCACATTCTCGATGGTGTCCGACGATTCGACC 8697 Query 34343 TCCACCGTGA-------TGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||| |||| || ||||| ||||| || ||||| ||||| Sbjct 8698 TCCAGGGTGANNNNNNNNNNTTTTTCCCGTGAGCGTTTTGACGAAGATTTGCAT 8751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323064463739840