Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1416 98.7 8e-16 seq999 96.9 3e-15 seq986 89.7 4e-13 >seq1416 Length=13108 Score = 98.7 bits (108), Expect = 8e-16 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 45175 GCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACC 45234 |||| |||| || || || || |||||||| || | || || |||||||| || | ||| Sbjct 8908 GCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGATACC 8967 Query 45235 CTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCAC 45294 |||||||||| ||| || ||| || | | | | |||| | ||| ||||||| Sbjct 8968 CTCCTTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGACCTCCAA 9027 Query 45295 GGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| || || |||||||| ||||||||||| Sbjct 9028 CGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCAT 9069 >seq999 Length=50871 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 45175 GCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACC 45234 |||| |||| || || || || |||||||| || | || || ||||||||||| | ||| Sbjct 19342 GCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGAGGGATACC 19401 Query 45235 CTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCAC 45294 ||| |||||| ||| || ||| || | | | | |||| | ||| ||||||| Sbjct 19402 CTCGTTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGACCTCCAA 19461 Query 45295 GGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || |||||||| || || |||||||| ||||||||| || Sbjct 19462 CGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCTTG 19504 >seq986 Length=59218 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 45180 CGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCT 45239 |||| || || || || |||||||| || | ||||| ||||| || || | || |||| Sbjct 6328 CGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATTCCTTCCT 6269 Query 45240 TGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAA 45299 ||||| ||| || ||| || | | | |||| | ||||||||| | ||| | Sbjct 6268 TGTCCTGAATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGA 6209 Query 45300 TCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 | ||||||||||| || ||||| || |||||||||||| || || Sbjct 6208 TAGTCTTGCCCGTAAGGGTCTTAACGAAGATTTGCATGGTGACT 6165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395065984130194