Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1416 84.2 2e-11 >seq1416 Length=13108 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||| || || || || || |||||||||||||||| Sbjct 8062 CCACCACGGAGACGAAGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAG 8121 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| ||||| || || |||||| |||| || | ||| ||||| ||| Sbjct 8122 AGCGTACGACCATCCTCCAACTGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGGGGA 8181 Query 18219 ACGCCTTCCTTATC--GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | || ||||| || || || ||| ||||| | | | |||||| || ||| Sbjct 8182 ATACCCTCCTTGTCTTGGATCTTCGTT--TTGACGTTCTCGATAGTGTCGGAGGACTCCA 8239 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||| | |||||||| | || || ||||| |||||||| Sbjct 8240 CTTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 8288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379335151089930