Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq972 201 1e-46 seq1026 154 1e-32 seq1416 104 2e-17 seq986 102 7e-17 seq999 84.2 2e-11 >seq972 Length=266462 Score = 201 bits (222), Expect = 1e-46 Identities = 372/543 (69%), Gaps = 2/543 (0%) Strand=Plus/Minus Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500 || || || ||||||||||| ||||| | |||| ||||| || || || | |||||| Sbjct 234424 TCAAAGACATCCGCATGCCAAGGCTCCAAATAAATAGCAAAAGCACCAGGCCGCTTATTC 234365 Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560 || ||||| || || || || || || |||||||| || || | ||| ||||| | ||| Sbjct 234364 CCACCCTGGTCAACATACCGCGCAGTATTGTTGTATACCCTCAACATGGGCACAATCCCG 234305 Query 23561 TTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620 ||||| ||| ||| || | ||| || || |||| || || || | Sbjct 234304 TTGGAGTACCCGTTCGTGCCAGCAATGTACGATCCCAAAGCGCGAATCTTATGCACATTA 234245 Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680 | ||| || || || | | ||| || ||||||||||| ||||||||| ||||| ||| Sbjct 234244 ATACCGATACCGCCAGCGGTTTTGGAGATCATCGCGCAAGTTTTCAGAGTTTCGTAAATG 234185 Query 23681 CCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGC 23740 || |||||| ||| || || ||| || ||||||||| || || | ||||| | || Sbjct 234184 CCGTCGATGGAGTCGTCCTTCATCGTGAGCAAGAAACAGGAGGAGAGTTGCGGGTGAGGG 234125 Query 23741 GTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCG-ACATTAGATT 23799 || |||| ||| || || || ||||| || ||||| | |||| |||| || | Sbjct 234124 GTGCCGGCATTGAAGAGGGTGGGTGATGCGTGGGTGAAGTA-CTTTTCGGACATGAGTTC 234066 Query 23800 GTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCAT 23859 ||| || |||||||||||||| | ||| || || || ||||||| || || ||||| | Sbjct 234065 GTATGTTTCGATGGCGGCATCTACGTCGTCACCATGAATACCGACAGCAACACGCATGAG 234006 Query 23860 CATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCAT 23919 ||||| ||||| || || | | | ||| || || || || || |||| | Sbjct 234005 CATGTGCTGAGGCCTTTCTGCGATCTTGTTGTTGATGCGGAGGAGGTAGGAGCGTTCGAG 233946 Query 23920 CGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 || || || || || |||| ||||| ||||| || |||| | ||||| || || | Sbjct 233945 GGTCTTGAAGCCGAAGTAGTTGTAGTTGAAGTCGCGGTCGTAGATGATGGCGGAGTTGAG 233886 Query 23980 ACG 23982 ||| Sbjct 233885 ACG 233883 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 22397 TTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTC 22456 || || ||| |||| | ||||||| | | ||||||||||| | || ||| | ||| Sbjct 235721 TTCTTCATCTTATCATCCCACAAATTCAACTCCGTCAAATCTTTCAACAAATGCTGATTC 235662 Query 22457 ACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516 || | || || || ||| ||| || || || ||| |||||||| ||| | |||||| Sbjct 235661 ACAATCTGGAATTCACCGCTCAATACCCGCCGGGTGTAGATGTTGGACGTGTAGGGTTCG 235602 Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576 || |||| ||||| || || || || | ||| || ||||||||||| || || | || Sbjct 235601 AAGCATTCGTTGTTGCCTAGGATTTGCGAGGTGGAGGCGGTCGGCATGGGTGCGACGAGG 235542 Query 22577 AGCGAGTTTCTCAAGCCGTGCTTTGAAATTT 22607 || ||||| || | ||||| || | |||| Sbjct 235541 AGGGAGTTCCTGATACCGTGTTTGGCGATTT 235511 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23005 AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGT 23064 |||||| ||| | | ||| || || | ||||| || || ||||| || || | Sbjct 235038 AACAAAGTTGGGCAACGAGATGGACGCCAAGTTGCACACAGCAACCTCATCAGGAGAAGA 234979 Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124 || || ||||| || ||||| || || || ||||| || || || | || |||||| Sbjct 234978 ATATTCAACAATCTCAGTACAGAGGTTACTGCACTTAATGGTTCCGAGGTTTTGCTGGTT 234919 Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184 | ||| || || |||| ||||||||||||||||| ||| ||||||||| |||||| Sbjct 234918 GGATTTGCGGTTACACGCGTCCTTGTAGAGCATGTAGGGCACACCCGTCTCGGTCTGCGA 234859 Query 23185 CTCGATGATCGCTCGCCACA 23204 || | |||||| ||||| Sbjct 234858 TTCCAAGATCGCGTACCACA 234839 >seq1026 Length=25707 Score = 154 bits (170), Expect = 1e-32 Identities = 316/468 (68%), Gaps = 4/468 (1%) Strand=Plus/Minus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 ||||| || | || |||| |||||||| || || ||||| ||||| || ||| |||| Sbjct 12809 TTCGCAGAACGTCTCGTCGCTTTCGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTTT 12750 Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 || | || || ||| ||||||| || ||| ||||||||||||| || || |||||| Sbjct 12749 GCTTCCATCTTCTGGCTGAAGAAGCGAGGCATGATGCCCGGCCTCACTTTCTCCAACGAA 12690 Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT 58142 | || || || ||||| || ||||| |||||||| ||||| | | | | || | Sbjct 12689 CTCATCTCCCGTGACGAAGGCCTCCACTGCGATTTTGCTTGCCTCCTCTTCACACAACTC 12630 Query 58143 GTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAA 58202 | | || || | | || | | | | || |||||||| ||||| | |||||| Sbjct 12629 AACCAAAAGCCCGCTCATGAAACCGTTCTCCAAATCATCACCGAAGCGGTGGGCATCGAA 12570 Query 58203 AATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATG 58262 | || || ||||||| || || || || ||| | |||| |||||| | | ||| Sbjct 12569 CAAGAATTCCTCACCGACGCTCTCCCCGTTGCCCTCATCGGCATGAACTCCGTCCTCATG 12510 Query 58263 TCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTC 58320 | |||||| ||||| || || ||| | || | ||| | |||| | | Sbjct 12509 TGCCGGTACATCGAGTTCGTCGCTGACCGTCTCCTCGTCGCCTTGGGATTCCCCA--AGC 12452 Query 58321 ATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAA 58380 | |||||| | ||||||| ||||| || ||| | |||| || | |||||||||| | Sbjct 12451 ACTACAACGCCGAAAATCCCTTTGACTTCATGGAGTTGATTTCCTTGCAGGGCAAGACCA 12392 Query 58381 ACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGA 58428 |||| || || || || || | || |||||||| |||||| |||| Sbjct 12391 ACTTCTTTGAGAAGAAGGTCGGGGAGTATCAAAAGGCCGGCGTCATGA 12344 >seq1416 Length=13108 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || || || || || || |||||| | || || || | ||| Sbjct 8516 ATGCAAATCTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCCTCC 8457 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || || || |||||||||||| | || ||||||||| Sbjct 8456 GACACGATCGAAAACGTGAAGACGAAGATCCAGGACAAGGAAGGAATCCCCCCCGACCAG 8397 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| |||||||| | |||||| || | ||| || ||| Sbjct 8396 CAACGTCTCATCTTCGCCGGCAAACAACTTGAAGACGGCCGCACCCTCTCCGACTACAAC 8337 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || || ||||| || || Sbjct 8336 ATCCAGAAGGAATCCACCCTCCATCTCGTCCT 8305 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||| |||| ||||| || ||||| |||| || ||| | ||| Sbjct 9446 ATGCAAATCTTTGTGAAGACTTTGACCGGCAAGACCATCACGCTCGAGGTCGAATCTTCC 9387 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | || ||||||||||||| | || || |||||| Sbjct 9386 GACACGATCGAGAACGTCAAAACCAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAG 9327 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 || ||||| || ||||| || || ||| | || ||| Sbjct 9326 CAACGTCTCATCTTCGCCGGGAAGCAGCTTGAGGAC 9291 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| || ||||| | || || || | ||| Sbjct 9069 ATGCAAATCTTCGTGAAGACCCTTACTGGCAAGACCATCACGTTGGAGGTCGAGTCTTCC 9010 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||| || | ||||||||||| Sbjct 9009 GACACCATCGAGAATGTCAAGACCAAGATTCA-GGACAAGGAGGGTATCCCGCCCGACCA 8951 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||| ||||| || ||||| ||||| ||| | || ||| Sbjct 8950 GCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGAC 8914 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/236 (68%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGA-------TCACCGTCGACGTTGA 31245 |||||||| ||||| || || || || || |||| ||||| | || || || Sbjct 8751 ATGCAAATCTTCGTCAAAACGCTCACGGGAAAAANNNNNNNNNNTCACCCTGGAGGTCGA 8692 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 | |||| |||| |||| | || || || || ||||||||| || | ||||| Sbjct 8691 ATCGTCGGACACCATCGAGAATGTGAAGACGAAGATCCAGGACAAGGAGGGTATCCCGCC 8632 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 ||||||||| ||||| || ||||| |||||||| | || ||| ||| | ||| Sbjct 8631 CGACCAGCAACGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACTCTCTCCGA 8572 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| ||||| ||||| || ||||| || || || | || | ||||||| Sbjct 8571 CTACAACATCCAAAAGGAATCCACCCTTCACCTCGTCCTCCGTCTTCGCGGCGGTA 8516 >seq986 Length=59218 Score = 102 bits (112), Expect = 7e-17 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| || |||||| |||| || || | || Sbjct 6171 CATGCAAATCTTCGTTAAGACCCTTACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTC 6230 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| | || | ||||| || ||| | |||||||||||| | || || |||| Sbjct 6231 CGACACCATTGACAACGTCAAGACCAAGATTCA-GGACAAGGAAGGAATTCCCCCTGACC 6289 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||||| || ||||| ||||| ||| | || ||| Sbjct 6290 AGCAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGAC 6327 >seq999 Length=50871 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 || |||||| ||||| ||||| || || ||||| || ||||| | || || || | || Sbjct 19504 CAAGCAAATCTTCGTGAAGACCCTTACTGGCAAGACCATCACGTTGGAGGTCGAGTCTTC 19445 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| |||| | ||||| || ||| | |||||| || || | || ||||||| Sbjct 19444 CGACACCATCGAGAATGTCAAGACCAAGATTCA-GGACAACGAGGGTATCCCTCCCGACC 19386 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||| ||||| || ||||| ||||| ||| | || ||| Sbjct 19385 AGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGAC 19348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755735038880