Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq972 156 5e-33 seq1026 116 5e-21 seq736 91.5 2e-13 >seq972 Length=266462 Score = 156 bits (172), Expect = 5e-33 Identities = 467/717 (65%), Gaps = 8/717 (1%) Strand=Plus/Minus Query 63371 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 63430 ||| | |||||| || ||||| || || || | | | |||||||| || || || ||||| Sbjct 234416 ATCCGCATGCCAAGGCTCCAAATAAATAGCAAAAGCACCAGGCCGCTTATTCCCACCCTG 234357 Query 63431 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATAT 63490 || | || | || || || || || || |||||||| || | ||| ||||| || Sbjct 234356 GTCAACATACCGCGCAGTATTGTTGTATACCCTCAACATGGGCACAATCCCGTTGGAGTA 234297 Query 63491 ACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA--CTAATTGATAGACCT 63548 || || || || | || || ||| || ||||| ||| | ||| ||| || Sbjct 234296 CCCGTTCGTGCCAGCAATGTACGATCCCAAAGCGCGAATCTTATGCACATTAATA--CCG 234239 Query 63549 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCT 63608 || || || || |||| ||||| | ||||| ||| | || || || ||||| || Sbjct 234238 ATACCGCCAGCGGTTTTGGAGATCATCGCGCAAGTTTTCAGAGTTTCGTAAATGCCGTCG 234179 Query 63609 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCC 63668 ||| || || |||| | || | |||||| || | ||| | ||| || || Sbjct 234178 ATGGAGTCGTCCTTCATCGTGAGCAAGAAACAGGAGGAGAGTTGCGGGTGAGGGGTGCCG 234119 Query 63669 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63728 ||||| || | ||| || || ||||| || || | ||||| || | || | ||| || Sbjct 234118 GCATTGAAGAGGGTGGGTGATGCGTGGGTGAAGTACTTTTCGGACATGAGTTCGTATGTT 234059 Query 63729 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63788 || || || | |||| || |||||| || || || |||||||| | ||||||| Sbjct 234058 TCGATGGCGGCATCTACGTCGTCACCATGAATACCGACAGCAACACGCATGAGCATGTGC 233999 Query 63789 TGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63848 ||||| ||||| | || |||||||| || | | |||||| ||| | || || Sbjct 233998 TGAGGCCTTTCTGCGATCTTGTTGTTGATGCGGAGGAGGTAGGAGCGTTCGAGGGTCTTG 233939 Query 63849 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG--CTTAT 63906 || || || |||||||| ||||| || ||||| || || | || ||||| || | Sbjct 233938 AAGCCGAAGTAGTTGTAGTTGAAGTCGCGGTCGTAGATGATGGCGGAGTTGAGACGTTCT 233879 Query 63907 CCTTATATTTGTTAACTATATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCAT 63966 | | ||||| | || | ||| | || || || || || || || || Sbjct 233878 GCGTTCTTTTGT--ATGGAGTCGAAGGTCTCTTTGGAGATCATGGGGGAGTGCTTGCCGG 233821 Query 63967 TTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTT 64026 |||| || || | |||||| | || || ||| |||| ||| | || || || | Sbjct 233820 TTTTGGGGTTGATGTAGTTGTACAAGTCTTCCGATACTTGGGAAAACTGCTTCTTGGTCT 233761 Query 64027 CCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTT 64083 ||||||| | || || ||||| || | || || || |||||||| || || |||| Sbjct 233760 CCTTGTGCACGTTCGAGATGGCAATGCGAGCAGCAAGGATGGCATAGTCTGGGTGTT 233704 >seq1026 Length=25707 Score = 116 bits (128), Expect = 5e-21 Identities = 230/339 (68%), Gaps = 11/339 (3%) Strand=Plus/Plus Query 33456 TTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACC 33515 ||||| || ||||| ||| || ||||| | || || ||||||||||| ||| ||| Sbjct 12523 TTCATGCCGATGAGGGCAACGGGGAGAGCGTCGGTGAGGAATTCTTGTTCGATGCCCACC 12582 Query 33516 GCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGG----TGGATGTAATAAATGTTT 33571 || | || || || ||||||||| | | || ||| || | ||| | Sbjct 12583 GCTTCGGTGATGATTTGGAGAACGGTTTCATGAGCGGGCTTTTGGTTG----AGTTGTGT 12638 Query 33572 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGA 33631 || | | || || ||||||||||| || || ||||| | || | |||||| || Sbjct 12639 GAAGAGGAGGCAAGCAAAATCGCAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGA 12698 Query 33632 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33691 || ||||| |||||||| | ||| ||||| || ||||| || |||||||| || || || Sbjct 12699 GAAAGTGAGGCCGGGCATCATGCCTCGCTTCTTCAGCCAGAAGATGGAAGCAAAGGAGCC 12758 Query 33692 GGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---C 33748 ||| |||||||| || || ||||| || || || | || | ||| | | ||| | Sbjct 12759 GGAGAAGAAGATACCCTCAACTGCGGCGAAAGCGACGAGACGTTCTGCGAAGACGGAGTC 12818 Query 33749 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 |||| | ||||| ||||||| ||||||||||| Sbjct 12819 CTTGTCTTCGATCCATCGAAGAGCCCAGTCGGCCTTCTT 12857 >seq736 Length=77482 Score = 91.5 bits (100), Expect = 2e-13 Identities = 170/244 (70%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 |||||| ||||||||| ||||| | ||||| ||||||| || || | || || | Sbjct 55987 CATTTCGCTATGAATGTTCTCAATCATCGTCTGATATCCGTAAAAGCACCGTGCTTCTGC 56046 Query 33935 AATCTGCACTTCTGTACAAAATCGT-TCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 | |||| || || | | ||||| | | | ||||||||||| || || || || | Sbjct 56047 ATTCTGAACCTCGTTCGAGAATCGCATATTC-AAATTTTCATTGACAATGCCGTCCGATG 56105 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGTGTTAGTTTATT- 34051 | ||||| |||||||| ||||| ||||||| ||| | |||| ||||| | || || || Sbjct 56106 CGGCAAAGAACGCCAAGACATGACTTATAAAGTATCTCTCGTCCTGGT-TGAGCTTGTTC 56164 Query 34052 --CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 ||| || || || || | | ||| || ||||| | ||||| || || ||||| Sbjct 56165 TCCCAGTCGCCTATGTCCTTCGCAAGATCGACCTCTTCAGCGGTCCAGAACGAAGCCTCA 56224 Query 34110 GCCT 34113 |||| Sbjct 56225 GCCT 56228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629802531613920