Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq972 161 1e-34 seq1026 105 9e-18 seq736 86.0 8e-12 >seq972 Length=266462 Score = 161 bits (178), Expect = 1e-34 Identities = 467/712 (66%), Gaps = 10/712 (1%) Strand=Plus/Minus Query 66170 ATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 66229 |||||| || ||||| || || || | | | |||||||| || || || ||||| || | Sbjct 234410 ATGCCAAGGCTCCAAATAAATAGCAAAAGCACCAGGCCGCTTATTCCCACCCTGGTCAAC 234351 Query 66230 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCA-T 66288 || | || || || || || || |||||||| || | ||| || ||||| ||||| | Sbjct 234350 ATACCGCGCAGTATTGTTGTATACCCTCAACATGGGCACAATCCCGTTGGA-GTACCCGT 234292 Query 66289 TGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTA--CTAATTGATAGACCTATTCC 66346 | || || | || || ||| || ||||| ||| | ||| ||| || || || Sbjct 234291 TCGTGCCAGCAATGTACGATCCCAAAGCGCGAATCTTATGCACATTAATA--CCGATACC 234234 Query 66347 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACT 66406 || || |||| ||||| | ||||| ||| | || || || ||||| || || Sbjct 234233 GCCAGCGGTTTTGGAGATCATCGCGCAAGTTTTCAGAGTTTCGTAAATGCCGTCGATGGA 234174 Query 66407 ATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATT 66466 || ||| |||| | || | |||||| || | ||| | || || || ||||| Sbjct 234173 GTCGTCCTTCATCGTGAGCAAGAAACAGGAGGAGAGTTGCGGGTGAGGGGTGCCGGCATT 234114 Query 66467 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT 66526 || | ||| || || ||||| || || | ||||| || | || | ||| || || || Sbjct 234113 GAAGAGGGTGGGTGATGCGTGGGTGAAGTACTTTTCGGACATGAGTTCGTATGTTTCGAT 234054 Query 66527 AGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 66586 || | |||| || |||||| || || || |||||||| | |||||||||||| Sbjct 234053 GGCGGCATCTACGTCGTCACCATGAATACCGACAGCAACACGCATGAGCATGTGCTGAGG 233994 Query 66587 TCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 66646 ||||| ||||||||||||| || | | |||||| ||| | || || || || Sbjct 233993 CCTTTCTGCGATCTTGTTGTTGATGCGGAGGAGGTAGGAGCGTTCGAGGGTCTTGAAGCC 233934 Query 66647 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG--TTTATCCTTA 66704 || |||||||| ||||| || ||||| || || | |||||||| || | | | Sbjct 233933 GAAGTAGTTGTAGTTGAAGTCGCGGTCGTAGATGATGGCGGAGTTGAGACGTTCTGCGTT 233874 Query 66705 TATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA 66764 ||||| | || | ||| | || || || || || || || || |||| Sbjct 233873 CTTTTGT--ATGGAGTCGAAGGTCTCTTTGGAGATCATGGGGGAGTGCTTGCCGGTTTTG 233816 Query 66765 GGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTG 66824 || |||| |||||| | || || ||| |||| ||| | || || || || ||| Sbjct 233815 GGGTTGATGTAGTTGTACAAGTCTTCCGATACTTGGGAAAACTGCTTCTTGGTCTCCTTG 233756 Query 66825 TGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTT 66876 || | || || | ||| || | ||| || | |||||||| || || |||| Sbjct 233755 TGCACGTTCGAGATGGCAATGCGAGCAGCAAGGATGGCATAGTCTGGGTGTT 233704 >seq1026 Length=25707 Score = 105 bits (116), Expect = 9e-18 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || ||||||||||| || || ||||| | || | ||||||||| || ||||| Sbjct 12649 CAAGCAAAATCGCAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGG 12708 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||||||| | ||| ||||| || ||||| || ||||| ||||| || || || ||||| Sbjct 12709 CCGGGCATCATGCCTCGCTTCTTCAGCCAGAAGATGGAAGCAAAGGAGCCGGAGAAGAAG 12768 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGT 36334 || || || ||||| || || || | || | ||| | | ||| | |||| | Sbjct 12769 ATACCCTCAACTGCGGCGAAAGCGACGAGACGTTCTGCGAAGACGGAGTCCTTGTCTTCG 12828 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTT 36363 ||||| ||||||| ||||||||||| Sbjct 12829 ATCCATCGAAGAGCCCAGTCGGCCTTCTT 12857 >seq736 Length=77482 Score = 86.0 bits (94), Expect = 8e-12 Identities = 169/244 (69%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 36510 |||||| ||||||||| ||||| | | ||| ||||||| || || | || || | Sbjct 55987 CATTTCGCTATGAATGTTCTCAATCATCGTCTGATATCCGTAAAAGCACCGTGCTTCTGC 56046 Query 36511 AATCTGTACTTCTGTACAAAATCGT-TCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 | |||| || || | | ||||| | | | ||||||||||| || || ||||| | Sbjct 56047 ATTCTGAACCTCGTTCGAGAATCGCATATTC-AAATTTTCATTGACAATGCCGTCCGATG 56105 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTGTTAGTTTATT- 36627 | ||||| |||||||| ||||| ||||||| ||| | |||| |||| | || || || Sbjct 56106 CGGCAAAGAACGCCAAGACATGACTTATAAAGTATCTCTCGTCCTGGT-TGAGCTTGTTC 56164 Query 36628 --CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 ||| || || || || | | ||| || ||||| | ||||| || || ||||| Sbjct 56165 TCCCAGTCGCCTATGTCCTTCGCAAGATCGACCTCTTCAGCGGTCCAGAACGAAGCCTCA 56224 Query 36686 GCCT 36689 |||| Sbjct 56225 GCCT 56228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658157053215760