Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1211 134 1e-26 >seq1211 Length=8054 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 ||||||||| | ||| ||||| || ||||| || | ||||| || | || || Sbjct 781 CGGAAACGGCCTCGGCTCCCTCCCCAACTGAACTTTCAACGCCTCAACATGATCATTATA 840 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 || || ||||||||||| || ||||| |||||||| || |||||||| || || Sbjct 841 CACATGCGCGTCACCCAAACAATGGACAAACTCTCCCGGACGGAGACCCGTGACATGGGC 900 Query 21008 GATCA-GATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGT 21066 ||||| ||| || |||||||||||| ||||||||| || ||||| ||||||||||||| Sbjct 901 GATCATGAT-GGTTAGGAGGGCGTAGGAGGCGATGTTGAAGGGGACGCCGAGGCCCATGT 959 Query 21067 CGGCGGACCTCTGGTACAGCTGGCAGGACAG 21097 || ||| | ||||| || |||||||| || Sbjct 960 CGCAGGAGCGTTGGTAGAGTTGGCAGGAGAG 990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427766021322720