Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq999 107 2e-18 seq1416 105 7e-18 seq1169 87.8 2e-12 >seq999 Length=50871 Score = 107 bits (118), Expect = 2e-18 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || ||||| | || | ||||| || || || ||||| ||||| || ||| Sbjct 17932 CCACCACGGAAACGGAGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAG 17991 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| ||||| ||||| || || |||| ||||||||||| || || || Sbjct 17992 AGAGTGCGGTCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGA 18051 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||||||||||| |||||| || | | ||| | ||||||| || ||||| | Sbjct 18052 ATGCCTTCTTTGTTCTGGATTTTCGTCTTCACGTTTTCGATCGTGTCGGAGGTCTCCATC 18111 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | | ||||| || || | |||||| ||||| ||||| ||| Sbjct 18112 TCAAGG---ATTGTCTTTCCCGTGAGCGTTTTGACGAAGATTTGTATA 18156 >seq1416 Length=13108 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || || ||||| || ||| | |||| |||||| || ||||| || Sbjct 8320 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGTTGTTTGCCG 8379 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||||||||| ||||| || || ||||| ||||| ||| || || Sbjct 8380 GCGAAGATGAGACGTTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGGATCTTCGTCTTC 8439 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||||| || ||||||||||| ||| | ||||| || || | ||| Sbjct 8440 ACGTTTTCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTT 8499 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| ||||||||| Sbjct 8500 TTGACGAAGATTTGCATA 8517 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || |||||||| || ||| | || | || || | ||| || || Sbjct 8092 GTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGACCATCCTCCAACTGCTTCCCC 8151 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| |||||||||||||| || || || || || ||||| ||| || ||| Sbjct 8152 GCAAAGATGAGACGTTGCTGATCAGGGGGAATACCCTCCTTGTCTTGGATCTTCGTTTTG 8211 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| || |||||| || | || | |||||||||||| | || Sbjct 8212 ACGTTCTCGATAGTGTCGGAGGACTCCACTTCGAGAGTGATCGTCTTGCCGGTGAGGGTC 8271 Query 139748 TTTACGAATATTTGCATA 139765 || || || ||||||||| Sbjct 8272 TTCACAAAGATTTGCATA 8289 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| || ||||| || || || |||| ||||||||||| || || || |||||||| || Sbjct 9291 GTCCTCAAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCCTT 9350 Query 139669 GTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 ||| ||| | || ||||| | | || | ||||||| | || ||||| | || | Sbjct 9351 GTC-CTGAATCTTGGTTTTGACGTTCTCGATCGTGTCGGAAGATTCGACCTCGAGCGTGA 9409 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||||||||| || || || || |||||||| Sbjct 9410 TGGTCTTGCCGGTCAAAGTCTTCACAAAGATTTGCAT 9446 >seq1169 Length=14909 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| |||||||| || | || |||| ||| ||||||| || || || ||||| || || Sbjct 5700 GTCCTCGAGCTGCTTGCTGGCGAAGATGAGATGTTGCTGGTCAGGGGGAATGCCCTCCTT 5641 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || ||| | | || | ||||||| | ||||||||||| ||| | Sbjct 5640 GTCTTGGATCTTCGTTTTGACGTTCTCGATGGTGTCGGACGACTCCACCTCAAGGGTGAT 5581 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | |||||| ||||| |||||||| Sbjct 5580 TGTCTTCCCCGTGAGCGTTTTGACGAAGATTTGCAT 5545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496052131668800