Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq972 150 3e-31 seq1026 125 1e-23 seq736 86.0 9e-12 >seq972 Length=266462 Score = 150 bits (166), Expect = 3e-31 Identities = 468/718 (65%), Gaps = 10/718 (1%) Strand=Plus/Minus Query 80043 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTG 80102 ||| | |||||| || ||||| || || || | | | || || || || || || ||||| Sbjct 234416 ATCCGCATGCCAAGGCTCCAAATAAATAGCAAAAGCACCAGGCCGCTTATTCCCACCCTG 234357 Query 80103 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 80162 || | || | || || || || || || |||||||| || | ||| || ||||| || Sbjct 234356 GTCAACATACCGCGCAGTATTGTTGTATACCCTCAACATGGGCACAATCCCGTTGGA-GT 234298 Query 80163 ACCA-TTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA--CTAATTGATAGACC 80219 ||| || || || | || || ||| || ||||| ||| | ||| ||| || Sbjct 234297 ACCCGTTCGTGCCAGCAATGTACGATCCCAAAGCGCGAATCTTATGCACATTAATA--CC 234240 Query 80220 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 80279 || || || || |||| ||||| | ||||| ||| | || || || ||||| || Sbjct 234239 GATACCGCCAGCGGTTTTGGAGATCATCGCGCAAGTTTTCAGAGTTTCGTAAATGCCGTC 234180 Query 80280 TATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 80339 ||| || || |||| | || | |||||| || | ||| | || || || Sbjct 234179 GATGGAGTCGTCCTTCATCGTGAGCAAGAAACAGGAGGAGAGTTGCGGGTGAGGGGTGCC 234120 Query 80340 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGT 80399 ||||| || | ||| || || ||||| || || | ||||| |||| || | ||| || Sbjct 234119 GGCATTGAAGAGGGTGGGTGATGCGTGGGTGAAGTACTTTTCGGACATGAGTTCGTATGT 234060 Query 80400 CTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTG 80459 || || || | |||| || |||||| || || || |||||||| | |||||| Sbjct 234059 TTCGATGGCGGCATCTACGTCGTCACCATGAATACCGACAGCAACACGCATGAGCATGTG 234000 Query 80460 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTT 80519 |||||| ||||| |||||||||| || || | | ||| || ||| | || || Sbjct 233999 CTGAGGCCTTTCTGCGATCTTGTTGTTGATGCGGAGGAGGTAGGAGCGTTCGAGGGTCTT 233940 Query 80520 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG--TTTA 80577 || || || |||||||| ||||| || ||||| || || | |||||||| || Sbjct 233939 GAAGCCGAAGTAGTTGTAGTTGAAGTCGCGGTCGTAGATGATGGCGGAGTTGAGACGTTC 233880 Query 80578 TCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCA 80637 | | | ||||| | || | ||| | || || || || || || || || Sbjct 233879 TGCGTTCTTTTGT--ATGGAGTCGAAGGTCTCTTTGGAGATCATGGGGGAGTGCTTGCCG 233822 Query 80638 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTT 80697 |||| || || | |||||| | || || ||| |||| ||| | || || || Sbjct 233821 GTTTTGGGGTTGATGTAGTTGTACAAGTCTTCCGATACTTGGGAAAACTGCTTCTTGGTC 233762 Query 80698 TCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTT 80755 |||||||| | || || | ||| || | || || | |||||||| ||||| |||| Sbjct 233761 TCCTTGTGCACGTTCGAGATGGCAATGCGAGCAGCAAGGATGGCATAGTCTGGGTGTT 233704 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659 ||||| || ||||| || || |||| || || || || ||||||| || | | | Sbjct 235037 ACAAAGTTGGGCAACGAGATGGACGCCAAGTTGCACACAGCAACCTCATCAGGAGAAGAA 234978 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 |||| | || ||||| ||||||||||| |||||||||||||| | ||||| || || Sbjct 234977 TATTCAACAATCTCAGTACAGAGGTTACTGCACTTAATGGTTCCGAGGTTTTGCTGGTTG 234918 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 || ||||||||| ||||| || || ||| | || ||| || || |||| ||| Sbjct 234917 GATTTGCGGTTACACGCGTCCTTGTAGAGCATGTAGGGCACACCCGTCTCGGTCTGCGAT 234858 Query 79780 TCTATAATCGCTTTCCA 79796 || | ||||| | ||| Sbjct 234857 TCCAAGATCGCGTACCA 234841 >seq1026 Length=25707 Score = 125 bits (138), Expect = 1e-23 Identities = 233/339 (69%), Gaps = 11/339 (3%) Strand=Plus/Plus Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 ||||| || || || ||| || ||||| | || || ||||||||||| ||| ||| Sbjct 12523 TTCATGCCGATGAGGGCAACGGGGAGAGCGTCGGTGAGGAATTCTTGTTCGATGCCCACC 12582 Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG----TGGATGCAATAAATGTTT 49949 || || || || || ||||||||| | | || ||| || | ||| | Sbjct 12583 GCTTCGGTGATGATTTGGAGAACGGTTTCATGAGCGGGCTTTTGGTTG----AGTTGTGT 12638 Query 49950 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 50009 || | | || || ||||||||||| || || ||||| | || ||||||||||| Sbjct 12639 GAAGAGGAGGCAAGCAAAATCGCAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGA 12698 Query 50010 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCC 50069 || ||||| |||||||| | ||| ||||| || ||||| || ||||| ||||| || || Sbjct 12699 GAAAGTGAGGCCGGGCATCATGCCTCGCTTCTTCAGCCAGAAGATGGAAGCAAAGGAGCC 12758 Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCT-CCATAAC--TGGC 50126 || |||||||| || || |||||||| || || || || | ||| | | || | | Sbjct 12759 GGAGAAGAAGATACCCTCAACTGCGGCGAAAGCGACGAGACGTTCTGCGAAGACGGAGTC 12818 Query 50127 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 |||| | ||||| ||||||| ||||||||||| Sbjct 12819 CTTGTCTTCGATCCATCGAAGAGCCCAGTCGGCCTTCTT 12857 >seq736 Length=77482 Score = 86.0 bits (94), Expect = 9e-12 Identities = 167/244 (68%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 |||||| ||||||||| ||||| | ||||| ||||||| || || | || || | Sbjct 55987 CATTTCGCTATGAATGTTCTCAATCATCGTCTGATATCCGTAAAAGCACCGTGCTTCTGC 56046 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | |||| || || | | ||||| | ||||||||||| || || ||||| || Sbjct 56047 ATTCTGAACCTCGTTCGAGAATCGCATATTCAAATTTTCATTGACAATGCCGTCCGATGC 56106 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGT--TGGGTGTTAGTTTATT- 50429 ||||| |||||||| ||||| ||||||| | | | |||| ||| || || || || Sbjct 56107 GGCAAAGAACGCCAAGACATGACTTATAAAGTATCTCTCGTCCTGGTTG--AGCTTGTTC 56164 Query 50430 --CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 ||| || || || || | | ||| || ||||| | ||||| || || ||||| Sbjct 56165 TCCCAGTCGCCTATGTCCTTCGCAAGATCGACCTCTTCAGCGGTCCAGAACGAAGCCTCA 56224 Query 50488 GCCT 50491 |||| Sbjct 56225 GCCT 56228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718251615418960