Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1026 87.8 2e-12 seq1051 82.4 7e-11 >seq1026 Length=25707 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || |||||||| || || ||||| || || | || |||||||| || || || | Sbjct 12649 CAAGCAAAATCGCAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGG 12708 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| ||||| || || | ||| || || | |||||| || ||||| ||||| Sbjct 12709 CCGGGCATCATGCCTCGCTTCTTCAGCCAGAAGATGGAAGCAAAGGAGCCGGAGAAGAAG 12768 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14027 || ||||||||||| || || || | | |||||| Sbjct 12769 ATACCCTCAACTGCGGCGAAAGCGACGAGACGTTCT 12804 >seq1051 Length=30516 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 13887 TGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCT 13946 || || || ||||||||| ||| | |||||| | | | || || || | | ||| Sbjct 9586 TGGAGCCCTTCATCTCTAGCAATGAATTCGTTGGTCTCTTTCAACCCAGGAAGTATCCCT 9645 Query 13947 CGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCA 14006 || || | |||||||| ||||| ||||||||||| || ||||| | ||||||| |||| Sbjct 9646 CGCTTCCTCAACCAAAAGATTGCGGCAAATGACCCTGAGAAGAAGACGCCCTCAATTGCA 9705 Query 14007 GCAAACGC 14014 |||||||| Sbjct 9706 GCAAACGC 9713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479716522507600