Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1026 87.8 2e-12 >seq1026 Length=25707 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || |||||||| || || ||||| || || | || |||||||| || || || | Sbjct 12649 CAAGCAAAATCGCAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGG 12708 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||||| ||||| || || | ||| || || | ||| || || ||||| ||||| Sbjct 12709 CCGGGCATCATGCCTCGCTTCTTCAGCCAGAAGATGGAAGCAAAGGAGCCGGAGAAGAAG 12768 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCT 13815 || ||||||||||| || || || | || |||||| Sbjct 12769 ATACCCTCAACTGCGGCGAAAGCGACGAGACGTTCT 12804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478577349762960