Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1026 100 4e-16 >seq1026 Length=25707 Score = 100 bits (110), Expect = 4e-16 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || ||||||||||| || || || || | || | ||||||||| || ||||| Sbjct 12649 CAAGCAAAATCGCAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGG 12708 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| | ||| ||||| || ||||| || || || ||||| || || || |||||| Sbjct 12709 CCGGGCATCATGCCTCGCTTCTTCAGCCAGAAGATGGAAGCAAAGGAGCCGGAGAAGAAG 12768 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGT 42241 || || || ||||| || || || | || | ||| | | ||| | |||| | Sbjct 12769 ATACCCTCAACTGCGGCGAAAGCGACGAGACGTTCTGCGAAGACGGAGTCCTTGTCTTCG 12828 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 ||||| ||||||| ||||||||||| Sbjct 12829 ATCCATCGAAGAGCCCAGTCGGCCTTCTT 12857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671123142994640