Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1416 96.9 4e-15 seq999 93.3 4e-14 >seq1416 Length=13108 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||| ||| | |||| |||||| |||||||| || Sbjct 8320 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGTTGTTTGCCG 8379 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||||||||| ||||| || || ||||| ||||| || || || Sbjct 8380 GCGAAGATGAGACGTTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGGATCTTCGTCTTC 8439 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | |||||| | || || || |||| || | ||||| || || | ||| Sbjct 8440 ACGTTTTCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTT 8499 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| ||||||||| Sbjct 8500 TTGACGAAGATTTGCATA 8517 >seq999 Length=50871 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/230 (70%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || ||||| | || | |||| || ||||| ||||| |||||||| ||| Sbjct 17932 CCACCACGGAAACGGAGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAG 17991 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| ||||||||||| || || |||| ||||||||||| || || || Sbjct 17992 AGAGTGCGGTCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGA 18051 Query 143078 ATGCCTTCTTTG-TCGGTAATTTTTTGT-TTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 |||||||||||| || | | |||| || || | | ||| | |||||| | || ||| Sbjct 18052 ATGCCTTCTTTGTTCTGGA--TTTTCGTCTTCACGTTTTCGATCGTGTCGGAGG--TCTC 18107 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | || || | ||||| || || | ||||| ||||| ||||| ||| Sbjct 18108 CATC-TCAAGGATTGTCTTTCCCGTGAGCGTTTTGACGAAGATTTGTATA 18156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507002269680480