Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1026 181 2e-40 seq736 89.7 8e-13 >seq1026 Length=25707 Score = 181 bits (200), Expect = 2e-40 Identities = 353/517 (68%), Gaps = 16/517 (3%) Strand=Plus/Minus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || || || ||||| | |||| |||| |||||||| ||| | | || | ||| Sbjct 12863 ATCCGCAAGAAGGCCGACTGGGCTCTTCGATGGATCGAAGACAAGGACTCCGTCTTCGCA 12804 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || | || || || |||||||| || ||||| |||||||| || || ||||| || Sbjct 12803 GAACGTCTCGTCGCTTTCGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTTTGCTTCC 12744 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| ||||| |||||||| || | |||||||| || || | ||||| | || Sbjct 12743 ATCTTCTGGCTGAAGAAGCGAGGCATGATGCCCGGCCTCACTTTCTCCAACGAACTCATC 12684 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTT-CGCAACTATCTGCG 125599 || || ||||| ||||| ||||| || ||||| || || || | ||||| | Sbjct 12683 TCCCGTGACGAAGGCCTCCACTGCGATTTTGCTTGCCTCCTCTTCACACAACT-----CA 12629 Query 125600 TCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGAT 125659 || | | | || |||||| || || | || | ||||| || ||| | || Sbjct 12628 ACCAAAAGCCCGCTC-----ATGAAACCGTTCTCCAAATCATCACCGAAGCGGTGGGCAT 12574 Query 125660 AGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCT 125719 |||||||| || || ||||| | || || || | | || |||||||||| | || Sbjct 12573 CGAACAAGAATTCCTCACCGACGCTCTCCCCGTTGCCCTCATCGGCATGAACTCCGTCCT 12514 Query 125720 AATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGCCGC 125777 |||||| |||||| ||||| || || || ||||| || || ||| ||| || | Sbjct 12513 CATGTGCCGGTACATCGAGTTCGTCGCTGACCGTCTCCTCGTCGCCTTGGGATT--CCCC 12456 Query 125778 AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAG 125837 ||| ||||||||| | ||||||||||| |||||| || || | |||| ||| Sbjct 12455 AAGCACTACAACGCCGAAAATCCCTTTGACTTCATGGAGTTGATTTCCTTGCAGGGCAAG 12396 Query 125838 ACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA-CAAA 125873 |||||||| || |||||||||||| | ||||| |||| Sbjct 12395 ACCAACTTCTTTGAGAAGAAGGTCGGGGAGTATCAAA 12359 Score = 105 bits (116), Expect = 1e-17 Identities = 196/285 (69%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| |||||||||||||||| | || || || ||||| | ||||| ||||| || ||| Sbjct 13263 TGGCAAATGTACAAAAAGGCCGAAGCTTCTTTCTGGACTGCTGAAGAAGTCGACCTTTCC 13204 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 ||||||||| ||| ||||| | ||| | | ||| || || | || || || | | Sbjct 13203 AAGGACCTGGTCGACTGGGAAAACCGTCTCAATGACGACGAACGTTACTTCATCTCCCGC 13144 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATT 125200 | | |||||||| || | || || || ||||||||||| || || || || || || Sbjct 13143 GTCCTTGCCTTCTTCGCTGCGTCTGACGGTATCGTCAACGAAAACCTCGTCGA-GCGCTT 13085 Query 125201 CTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGA 125260 | | || | || || || | ||||| || || || || ||||||||||| Sbjct 13084 CAGCAATGAAGTCCAGATCCCTGAAGCCCGCTGCTTCTATGGCTTTCAGATCATGATTGA 13025 Query 125261 GAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 |||| | ||| ||||||||||| |||| |||| ||||| Sbjct 13024 GAACATTCACAGTGAAATGTACTCGCTCTTGATCGACACCTACAT 12980 >seq736 Length=77482 Score = 89.7 bits (98), Expect = 8e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 ||||| |||| || || ||||| | |||||||||||||| | |||||| | ||| | Sbjct 56228 AGGCTGAGGCTTCGTTCTGGACCGCTGAAGAGGTCGATCTTGCGAAGGACATAGGCGACT 56169 Query 125098 GGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTT 125156 |||||| | | | || || ||| || | |||||| || | ||||| |||||| Sbjct 56168 GGGAGAACAAGCTCAACCAGGAC-GAGAGATACTTTATAAGTCATGTCTTGGCGTTCTTT 56110 Query 125157 GCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACC 125216 |||| || || || || ||||| || ||| || | |||||||| | ||| | Sbjct 56109 GCCGCATCGGACGGCATTGTCAATGAAAATTTGAATATGCGATTCTCGAACGAGGTTCAG 56050 Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAAC 125264 | | |||| | |||||||||||||| || | |||||||||||| Sbjct 56049 AATGCAGAAGCACGGTGCTTTTACGGATATCAGACGATGATTGAGAAC 56002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741041470158640