Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq986 98.7 2e-15 seq1416 91.5 3e-13 seq999 86.0 1e-11 >seq986 Length=59218 Score = 98.7 bits (108), Expect = 2e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 |||| || || | ||||| || || || || || || || || || | ||| || |||| Sbjct 6343 CAGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAG 6284 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 | || |||||||| || ||||||||||| | || || || || | ||| ||| || | Sbjct 6283 GGGGAATTCCTTCCTTGTCCTGAATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACT 6224 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||||| || || |||||||| || ||||| || || || || || ||||| Sbjct 6223 CCACCTCGAGGGTGATAGTCTTGCCCGTAAGGGTCTTAACGAAGATTTGCAT 6172 >seq1416 Length=13108 Score = 91.5 bits (100), Expect = 3e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 |||| || || | |||||| || || || || || || || || || | || || |||| Sbjct 9275 CAGAGAGGGTACGACCGTCCTCAAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCAG 9334 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 | || || ||||| || ||||||||||| | ||| || || || | || ||| || || Sbjct 9335 GGGGAATGCCTTCCTTGTCCTGAATCTTGGTTTTGACGTTCTCGATCGTGTCGGAAGATT 9394 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 | ||||| || || || ||||| || || | || || ||||| || |||||| Sbjct 9395 CGACCTCGAGCGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAGATTTGCATT 9447 Score = 86.0 bits (94), Expect = 1e-11 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 |||| | ||| | |||||| || || || || || || || || || | || || || | Sbjct 8898 CAGACAAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGG 8957 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 | || || || || || ||||||||||| | || ||||| || | ||| ||| || | Sbjct 8958 GCGGGATACCCTCCTTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACT 9017 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||||| | || || ||||| |||||||| || || || || || ||||| Sbjct 9018 CGACCTCCAACGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCAT 9069 >seq999 Length=50871 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 |||| | ||| | |||||| || || || || || || || || || | || || || | Sbjct 19332 CAGACAAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGG 19391 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 |||| || || || || ||||||||||| | || ||||| || | ||| ||| || | Sbjct 19392 GAGGGATACCCTCGTTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACT 19451 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 | ||||| | || || ||||| |||||||| || || || || || ||| Sbjct 19452 CGACCTCCAACGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGC 19501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151370164113112