Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1416 91.5 1e-13 >seq1416 Length=13108 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | |||||| || || ||||| ||||| ||| Sbjct 9292 TCCTCAAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCCTTG 9351 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || | |||||| ||| ||||| | ||||| || | ||||||| Sbjct 9352 TCCTGAATCTTGGTTTTGACGTTCTCGATCGTGTCGGAAGATTCGACCTCGAGCGTGATG 9411 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||| ||||||||||| ||||| Sbjct 9412 GTCTTGCCGGTCAAAGTCTTCACAAAGATTTGCAT 9446 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||| | ||| | || || ||||| || | ||| || ||| | || || || |||| Sbjct 8079 CACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGG--AGAGCGTACGACCATCC 8136 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| ||| || || ||||||| | | ||||||||| || |||||||| || ||||| Sbjct 8137 TCCAACTGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGGGGAATACCCTCCTTGTCT 8196 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || | |||||| ||| |||||| | | || || || | ||||| || Sbjct 8197 TGGATCTTCGTTTTGACGTTCTCGATAGTGTCGGAGGACTCCACTTCGAGAGTGATCGTC 8256 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||||||||| ||||| Sbjct 8257 TTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 8288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448280474633040