Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1394 143 4e-30 seq144 122 1e-23 >seq1394 Length=18346 Score = 143 bits (158), Expect = 4e-30 Identities = 127/156 (81%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||||||||| || |||||||| || || Sbjct 15957 GCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATCCAAGGCATTACCAAGCCCGCCAT 16015 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| ||||||||| ||||||| | |||| ||||||| Sbjct 16016 TCGTCGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGGCTCATCTACGAAGAGAC 16075 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTAT 16587 ||||| ||| | ||| |||||||| ||| ||| || Sbjct 16076 TCGTGGTGTCCTCAAGGTCTTCCTCGAGAACGTCAT 16111 >seq144 Length=180981 Score = 122 bits (134), Expect = 1e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || |||||||| || || |||||||| || ||||||||||| ||||||||| |||| Sbjct 1995 AGGCATTACCAAGCCCGCCATTCGTCGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTC 1936 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | |||| ||||||| || | ||| | ||| |||||||| ||| ||| || | Sbjct 1935 TGGGCTCATCTACGAAGAGACCCGCGGTGTCCTCAAGGTCTTCCTCGAGAACGTCATTCG 1876 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCAC 16635 |||||| | || ||||||||||| || || || || ||||| Sbjct 1875 TGATGCAGTGACTTACACCGAGCACGCCAAGCGAAAAACCGTCAC 1831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073450016402