Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq972 156 5e-33 seq1026 122 1e-22 seq736 96.9 4e-15 >seq972 Length=266462 Score = 156 bits (172), Expect = 5e-33 Identities = 467/717 (65%), Gaps = 8/717 (1%) Strand=Plus/Minus Query 63320 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 63379 ||| | |||||| || ||||| || || || | | | |||||||| || || || ||||| Sbjct 234416 ATCCGCATGCCAAGGCTCCAAATAAATAGCAAAAGCACCAGGCCGCTTATTCCCACCCTG 234357 Query 63380 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATAT 63439 || | || | || || || || || || |||||||| || | ||| ||||| || Sbjct 234356 GTCAACATACCGCGCAGTATTGTTGTATACCCTCAACATGGGCACAATCCCGTTGGAGTA 234297 Query 63440 ACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTA--CTAATTGATAGACCT 63497 || || || || | || || ||| || ||||| ||| | ||| ||| || Sbjct 234296 CCCGTTCGTGCCAGCAATGTACGATCCCAAAGCGCGAATCTTATGCACATTAATA--CCG 234239 Query 63498 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCT 63557 || || || || |||| ||||| | ||||| ||| | || || || || || || Sbjct 234238 ATACCGCCAGCGGTTTTGGAGATCATCGCGCAAGTTTTCAGAGTTTCGTAAATGCCGTCG 234179 Query 63558 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63617 ||| || || |||| | || | |||||| || | ||| | || || || Sbjct 234178 ATGGAGTCGTCCTTCATCGTGAGCAAGAAACAGGAGGAGAGTTGCGGGTGAGGGGTGCCG 234119 Query 63618 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63677 ||||| || | ||| || || ||||| || || | ||||| || | || | ||| || Sbjct 234118 GCATTGAAGAGGGTGGGTGATGCGTGGGTGAAGTACTTTTCGGACATGAGTTCGTATGTT 234059 Query 63678 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63737 || || || | |||| || |||||| || || || |||||||| | ||||||| Sbjct 234058 TCGATGGCGGCATCTACGTCGTCACCATGAATACCGACAGCAACACGCATGAGCATGTGC 233999 Query 63738 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63797 ||||| ||||| ||||||||||||| || | | |||||| ||| | || || Sbjct 233998 TGAGGCCTTTCTGCGATCTTGTTGTTGATGCGGAGGAGGTAGGAGCGTTCGAGGGTCTTG 233939 Query 63798 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG--TTTAT 63855 || || || |||||||| ||||| || ||||| || || | |||||||| || | Sbjct 233938 AAGCCGAAGTAGTTGTAGTTGAAGTCGCGGTCGTAGATGATGGCGGAGTTGAGACGTTCT 233879 Query 63856 CCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCAT 63915 | | ||||| | || | ||| | || || || || || || || || Sbjct 233878 GCGTTCTTTTGT--ATGGAGTCGAAGGTCTCTTTGGAGATCATGGGGGAGTGCTTGCCGG 233821 Query 63916 TTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTT 63975 |||| || || | |||||| | || || ||| |||| ||| | || || || | Sbjct 233820 TTTTGGGGTTGATGTAGTTGTACAAGTCTTCCGATACTTGGGAAAACTGCTTCTTGGTCT 233761 Query 63976 CCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTT 64032 ||||||| | || || | ||| || | || || || |||||||| || || |||| Sbjct 233760 CCTTGTGCACGTTCGAGATGGCAATGCGAGCAGCAAGGATGGCATAGTCTGGGTGTT 233704 >seq1026 Length=25707 Score = 122 bits (134), Expect = 1e-22 Identities = 231/339 (68%), Gaps = 11/339 (3%) Strand=Plus/Plus Query 33178 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 33237 ||||| || || || ||| || ||||| | || || ||||||||||| ||| ||| Sbjct 12523 TTCATGCCGATGAGGGCAACGGGGAGAGCGTCGGTGAGGAATTCTTGTTCGATGCCCACC 12582 Query 33238 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG----TGGATGCAATAAATGTTT 33293 || || || || || ||||||||| | | || ||| || | ||| | Sbjct 12583 GCTTCGGTGATGATTTGGAGAACGGTTTCATGAGCGGGCTTTTGGTTG----AGTTGTGT 12638 Query 33294 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 33353 || | | || || ||||||||||| || || ||||| | || ||||||||||| Sbjct 12639 GAAGAGGAGGCAAGCAAAATCGCAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGA 12698 Query 33354 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33413 || ||||| |||||||| | ||| ||||| || ||||| || |||||||| || || || Sbjct 12699 GAAAGTGAGGCCGGGCATCATGCCTCGCTTCTTCAGCCAGAAGATGGAAGCAAAGGAGCC 12758 Query 33414 AGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---C 33470 || |||||||| || || ||||| || || || | || | ||| | | ||| | Sbjct 12759 GGAGAAGAAGATACCCTCAACTGCGGCGAAAGCGACGAGACGTTCTGCGAAGACGGAGTC 12818 Query 33471 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 |||| | ||||| ||||||| ||||||||||| Sbjct 12819 CTTGTCTTCGATCCATCGAAGAGCCCAGTCGGCCTTCTT 12857 >seq736 Length=77482 Score = 96.9 bits (106), Expect = 4e-15 Identities = 169/243 (70%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 |||||| ||||||||| ||||| | ||||| ||||||| || || | || || | Sbjct 55987 CATTTCGCTATGAATGTTCTCAATCATCGTCTGATATCCGTAAAAGCACCGTGCTTCTGC 56046 Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 | |||| || || | | ||||| |||||||||||| || || ||||| || Sbjct 56047 ATTCTGAACCTCGTTCGAGAATCGCATATTCAAATTTTCATTGACAATGCCGTCCGATGC 56106 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGTGTTAGTTTATT-- 33773 ||||| |||||||| ||||| ||||||| ||| | |||| ||||| | || || || Sbjct 56107 GGCAAAGAACGCCAAGACATGACTTATAAAGTATCTCTCGTCCTGGT-TGAGCTTGTTCT 56165 Query 33774 -CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 33832 ||| || || || || | | ||| || ||||| | ||||| || || ||||| | Sbjct 56166 CCCAGTCGCCTATGTCCTTCGCAAGATCGACCTCTTCAGCGGTCCAGAACGAAGCCTCAG 56225 Query 33833 CCT 33835 ||| Sbjct 56226 CCT 56228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622932295988240