Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq972 132 1e-25 >seq972 Length=266462 Score = 132 bits (146), Expect = 1e-25 Identities = 297/440 (68%), Gaps = 6/440 (1%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 ||| | || ||||| ||| | |||||||||||| | ||||| ||| | || || ||| Sbjct 233988 GAAAGGCCTCAGCACATGCTCATGCGTGTTGCTGTCGGTATTCATGGTGACGACGTAGAT 234047 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGT-GTA-TTCACGCACGCCACGCCAA 363565 ||||| || |||||||| | || | || | ||| ||||| ||||| | || | Sbjct 234048 GCCGCCATCGAAACATACGAACTCAT--GTCCGAAAAGTACTTCACCCACGCATCACCCA 234105 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTT-CTAAAAATG 363624 | | | |||||| || || | | | || || | || || || |||||| || | ||| Sbjct 234106 CCCTCTTCAATGCCGGCACCCCTCACCCGCAACTCTCCTCCTG-TTTCTTGCTCACGATG 234164 Query 363625 AAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAG 363684 |||||||| |||||||| || || | || || || || | ||| || | || ||||| Sbjct 234165 AAGGACGACTCCATCGACGGCATTTACGAAACTCTGAAAACTTGCGCGATGATCTCCAAA 234224 Query 363685 AATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGC 363744 | || ||||| || ||| | | || || |||| || | |||||| Sbjct 234225 ACCGCTGGCGGTATCGGTATTAATGTGCATAAGATTCGCGCTTTGGGATCGTACATTGCT 234284 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 ||||| || ||||| || ||| | || |||||| | | || | ||||||||||| Sbjct 234285 GGCACGAACGGGTACTCCAACGGGATTGTGCCCATGTTGAGGGTATACAACAATACTGCG 234344 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 |||| || ||||||||||| ||||| || || |||||||| ||| | |||||| Sbjct 234345 CGGTATGTTGACCAGGGTGGGAATAAGCGGCCTGGTGCTTTTGCTATTTATTTGGAGCCT 234404 Query 363865 CATCATGCCGATATTTTTGA 363884 ||||| ||| | ||||| Sbjct 234405 TGGCATGCGGATGTCTTTGA 234424 Score = 122 bits (134), Expect = 2e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || || ||||| |||| || ||| |||| ||||||| ||||| || ||||| ||| Sbjct 234829 GCCCAAAAGCTGTGGTACGCGATCTTGGAATCGCAGACCGAGACGGGTGTGCCCTACATG 234888 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||| || |||| |||||||| ||||||||||| |||| || || ||| || Sbjct 234889 CTCTACAAGGACGCGTGTAACCGCAAATCCAACCAGCAAAACCTCGGAACCATTAAGTGC 234948 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAAC 364290 || ||||| ||||| |||||| ||||||| | |||| || ||| ||| || || ||| Sbjct 234949 AGTAACCTCTGTACTGAGATTGTTGAATATTCTTCTCCTGATGAGGTTGCTGTGTGCAAC 235008 Query 364291 CTTGCGTCGATCGCG 364305 | ||||| ||| || Sbjct 235009 TTGGCGTCCATCTCG 235023 Score = 100 bits (110), Expect = 7e-16 Identities = 436/684 (64%), Gaps = 12/684 (2%) Strand=Plus/Plus Query 364378 AATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAAT 364437 || ||| |||| | || |||| || || || || | || |||||| || || Sbjct 235177 AACCTCAACAAAATCATTGACATCAACTACTACCCGGTCCCCGAAGCCCGCAAGTCGAAC 235236 Query 364438 ATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT---GATG 364494 ||||| || ||||| || ||||| || || || || || || |||| ||| || |||| Sbjct 235237 ATGCGCCACCGCCCCATCGGTCTGGGCGTCCAAGGTCTTGCCGACGCTTTCATTAAGATG 235296 Query 364495 CTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACA 364554 | || || | || ||||||| || || ||| || || || ||| ||| || Sbjct 235297 CGCA---TGCCCTTCGATTCGCAAGAGGCCCGTCAGCTCAACCGCGACATCAGTGAGACG 235353 Query 364555 ATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAA-AACCAAGGGAAAGTACTC 364613 ||||| ||||| || | ||||| || || ||||| | || |||||| ||| Sbjct 235354 ATGTACTTTGCTGCCCTTGAAGCTTCTTGCGAGTTGGCTCAGAAGGAAGGGAC-GTATGA 235412 Query 364614 TACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCAC 364673 ||||||||||| |||| | |||| |||| || | ||||| |||| Sbjct 235413 AACTTATGAGGGAAGCCCTGTCAGCAAGGGTGTCCTCCAACCAGACATGTGGAACGTCAA 235472 Query 364674 GCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCG 364733 | | || | ||||||| |||||| || || ||| | | || || |||| | Sbjct 235473 GACCTCGGACCGATGGGACTGGGCCGAACTCCGATCCCAAATCGCCAAACACGGTATCAG 235532 Query 364734 CAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAA 364793 ||||||||| | || |||||||| || || || || | || ||||| || ||||| Sbjct 235533 GAACTCCCTCCTCGTCGCACCCATGCCGACCGCCTCCACCTCGCAAATCCTAGGCAACAA 235592 Query 364794 CGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATT 364853 ||| ||||||||||| | || ||| | || | || ||||| | ||| ||||| Sbjct 235593 CGAATGCTTCGAACCCTACACGTCCAACATCTACACCCGGCGGGTATTGAGCGGTGAATT 235652 Query 364854 TCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAG 364913 | | | || ||| || | | | || ||| | | || |||||| ||| | Sbjct 235653 CCAGATTGTGAATCAGCATTTGTTGAAAGATTTGACGGAGTTGAATTTGTGGGATGATAA 235712 Query 364914 CATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGA 364973 ||||||||| || || || | || ||| |||| |||| | |||| || Sbjct 235713 GATGAAGAACCGGATTATTGCGGAGGGGGGGAGTGTTCAGAGGATTCGGGAGATTCCGGA 235772 Query 364974 AGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAA--CTCTCATTGAT 365031 || ||||| ||||| || || || ||||| ||| | ||| | | |||||| Sbjct 235773 GGAGTTGAAGAGGATTTATAAGACTGTTTGGGAGATT--AGTCAGAAGGTTATTATTGAT 235830 Query 365032 ATGGCGGCCGATCGCGGTGCTTTT 365055 ||||| || || ||||| || ||| Sbjct 235831 ATGGCTGCTGAGCGCGGGGCGTTT 235854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303321637696748