Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1026 122 8e-23 seq1416 116 3e-21 seq986 93.3 4e-14 seq999 86.0 6e-12 seq972 82.4 7e-11 >seq1026 Length=25707 Score = 122 bits (134), Expect = 8e-23 Identities = 344/519 (66%), Gaps = 21/519 (4%) Strand=Plus/Minus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATC-AACAGCAGCACCGCGAC 46145 || ||| | |||||||| |||||||||| | |||||| || | || || || | Sbjct 12869 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTTCGATGGATCGAAGACAAGGACTCCGTC 12810 Query 46146 TTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTT 46205 || ||| || ||| | || || || || || ||||| |||| || || ||| || Sbjct 12809 TT-CGCAGAACGTCTCGTCGCTTTCGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTT 12751 Query 46206 TGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACG 46264 ||| ||||||| | | || || | ||| ||| ||||||||||| || || ||||| Sbjct 12750 TGCTTCCATCTTCTGGCTGAAGAAGCGAGG-CATGATGCCCGGCCTCACTTTCTCCAACG 12692 Query 46265 AGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTC 46324 | || || || || ||||| ||||| || || ||||| || ||| || ||| | Sbjct 12691 AACTCATCTCCCGTGACGAAGGCCTCCACTGCGATTTTGCTTGCCTCCTCTT---CACAC 12635 Query 46325 GCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCA 46384 | || | |||| || | || ||||| || || ||| || ||||||| || Sbjct 12634 AACTCAACCAAAAGCCCGCTCATGAAACCGTTCTCCAAATCATCACCGAAGCGGTGGGCA 12575 Query 46385 TTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGT 46444 | || | || || | || | ||| || |||| |||||| | ||||||||| | || Sbjct 12574 TCGAACAAGAATTCCTCACCGACGCTCTCCCCGTTGCCCTCATCGGCATGAACTCC--GT 12517 Query 46445 CA--ATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGT-GC----AGCTTCAC 46497 | |||||| ||||||||||| || || ||||| || ||||| || | ||| Sbjct 12516 CCTCATGTGCCGGTACATCGAGTTCGTCGCTGACCGTCTCCTCGTCGCCTTGGGATTC-- 12459 Query 46498 CAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAG 46557 || ||||| | |||| ||||| ||||| || ||| | || ||| || || Sbjct 12458 ---CCCAAGCACTACAACGCCGAAAATCCCTTTGACTTCATGGAGTTGATTTCCTTGCAG 12402 Query 46558 GGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTAT 46596 ||||| || || || || || ||| ||||| |||||| Sbjct 12401 GGCAAGACCAACTTCTTTGAGAAGAAGGTCGGGGAGTAT 12363 >seq1416 Length=13108 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| || ||||| || |||||||| ||| Sbjct 8290 CCACCACGGAGACGGAGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 8349 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || || || ||||| ||| |||| | ||| |||||||| || ||| Sbjct 8350 AGGGTGCGGCCGTCTTCAAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGGGGG 8409 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| ||| ||| | | || | || |||| |||||| | Sbjct 8410 ATTCCTTCCTTGTCCTGGATCTTCGTCTTCACGTTTTCGATCGTGTCGGAGGACTCCACC 8469 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || ||||| ||||| || ||||| Sbjct 8470 TCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAGATTTGCAT 8516 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | || | |||||||||||| ||||||||||| ||| Sbjct 8062 CCACCACGGAGACGAAGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAG 8121 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| | |||||| || || |||| | ||| ||||| || || || Sbjct 8122 AGCGTACGACCATCCTCCAACTGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGGGGA 8181 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| |||| | ||| | ||| |||| |||||| | Sbjct 8182 ATACCCTCCTTGTCTTGGATCTTCGTTTTGACGTTCTCGATAGTGTCGGAGGACTCCACT 8241 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || ||||| || || || || || || ||||| Sbjct 8242 TCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 8288 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 131071 GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATT 131130 ||||| |||||| ||||||||||| ||| |||| | ||| |||||||| || ||||| Sbjct 8906 GTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGATA 8965 Query 131131 CCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCG 131190 || || ||||| || || ||||| | ||| | || |||| ||||||| || Sbjct 8966 CCCTCCTTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGACCTCC 9025 Query 131191 ACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | ||| || || || || || || ||||| || ||||| Sbjct 9026 AACGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCAT 9069 >seq986 Length=59218 Score = 93.3 bits (102), Expect = 4e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 131070 GGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129 |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || || Sbjct 6336 GGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAAT 6277 Query 131130 TCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTC 131189 |||||| ||||| || || ||||| | || | || |||| ||||| | || Sbjct 6276 TCCTTCCTTGTCCTGAATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTC 6217 Query 131190 GACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || ||| | || || || || || || || ||||| || |||||| Sbjct 6216 GAGGGTGATAGTCTTGCCCGTAAGGGTCTTAACGAAGATTTGCATG 6171 >seq999 Length=50871 Score = 86.0 bits (94), Expect = 6e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 131071 GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATT 131130 ||||| |||||| ||||||||||| ||| |||| | ||| |||||||| |||||||| Sbjct 19340 GTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGAGGGATA 19399 Query 131131 CCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCG 131190 || || ||||| || || ||||| | ||| | || |||| ||||||| || Sbjct 19400 CCCTCGTTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGACCTCC 19459 Query 131191 ACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 | || | ||| || || || || || || ||||| || ||| || Sbjct 19460 AACGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCTTG 19504 >seq972 Length=266462 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 145670 TATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTA 145729 |||| || ||||| | || | || || || || |||||||| || |||||||| || Sbjct 234977 TATTCAACAATCTCAGTACAGAGGTTACTGCACTTAATGGTTCCGAGGTTTTGCTGGTTG 234918 Query 145730 CTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTC 145789 ||| | ||| ||||||||||||||||||||||| || | || ||||| ||||| Sbjct 234917 GATTTGCGGTTACACGCGTCCTTGTAGAGCATGTAGGGCACACCCGTCTCGGTCTGCGAT 234858 Query 145790 TCCACGAT 145797 |||| ||| Sbjct 234857 TCCAAGAT 234850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472001507093760