Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq999 86.0 5e-12 >seq999 Length=50871 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/203 (69%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| |||||||| ||||||||||||| | || | ||||||| | |||| Sbjct 17956 TGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGTCGTCCTCGAGTTGT 18015 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | || || || || ||||| || | ||| ||||||| |||| | Sbjct 18016 TTGCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCTTTGTTCTGGATTTTC 18075 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | |||||| || |||| | || | ||| || ||||| || Sbjct 18076 GTCTTCACGTTTTCGATCGTGTCGGAGGTCTCCATCTCAA---GGATTGTCTTTCCCGTG 18132 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 ||||||||||| || || || || Sbjct 18133 AGCGTTTTGACGAAGATTTGTAT 18155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405078550562860