Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq972 163 4e-35 seq1026 105 8e-18 seq736 95.1 2e-14 >seq972 Length=266462 Score = 163 bits (180), Expect = 4e-35 Identities = 471/718 (66%), Gaps = 10/718 (1%) Strand=Plus/Minus Query 63175 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 63234 ||| | |||||| || ||||| || || || | | | |||||||| || || || ||||| Sbjct 234416 ATCCGCATGCCAAGGCTCCAAATAAATAGCAAAAGCACCAGGCCGCTTATTCCCACCCTG 234357 Query 63235 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 63294 || | || | || || || || || || |||||||| || | ||| || ||||| || Sbjct 234356 GTCAACATACCGCGCAGTATTGTTGTATACCCTCAACATGGGCACAATCCCGTTGGA-GT 234298 Query 63295 ACCA-TTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTA--CTAATTGATAGACC 63351 ||| || || || | || || ||| || ||||| ||| | ||| ||| || Sbjct 234297 ACCCGTTCGTGCCAGCAATGTACGATCCCAAAGCGCGAATCTTATGCACATTAATA--CC 234240 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 || || || || |||| ||||| | ||||| ||| | || || || ||||| || Sbjct 234239 GATACCGCCAGCGGTTTTGGAGATCATCGCGCAAGTTTTCAGAGTTTCGTAAATGCCGTC 234180 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63471 || || ||| |||| | || | |||||| || | ||| | || || || Sbjct 234179 GATGGAGTCGTCCTTCATCGTGAGCAAGAAACAGGAGGAGAGTTGCGGGTGAGGGGTGCC 234120 Query 63472 CGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63531 ||||| || | ||| || || ||||| || || | ||||| || | || | ||| || Sbjct 234119 GGCATTGAAGAGGGTGGGTGATGCGTGGGTGAAGTACTTTTCGGACATGAGTTCGTATGT 234060 Query 63532 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63591 || || || | |||| || |||||| || || || |||||||| | |||||| Sbjct 234059 TTCGATGGCGGCATCTACGTCGTCACCATGAATACCGACAGCAACACGCATGAGCATGTG 234000 Query 63592 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63651 |||||| ||||| ||||||||||||| || | | |||||| ||| | || || Sbjct 233999 CTGAGGCCTTTCTGCGATCTTGTTGTTGATGCGGAGGAGGTAGGAGCGTTCGAGGGTCTT 233940 Query 63652 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG--TTTA 63709 || || || |||||||| ||||| || ||||| || || | |||||||| || Sbjct 233939 GAAGCCGAAGTAGTTGTAGTTGAAGTCGCGGTCGTAGATGATGGCGGAGTTGAGACGTTC 233880 Query 63710 TCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATGTTTCCCA 63769 | | | ||||| | || | ||| | || || || || | || || || Sbjct 233879 TGCGTTCTTTTGT--ATGGAGTCGAAGGTCTCTTTGGAGATCATGGGGGAGTGCTTGCCG 233822 Query 63770 TTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTT 63829 |||| || |||| |||||| | || || ||| |||| ||| | || || || Sbjct 233821 GTTTTGGGGTTGATGTAGTTGTACAAGTCTTCCGATACTTGGGAAAACTGCTTCTTGGTC 233762 Query 63830 TCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTT 63887 || ||||| | || || | ||| || | ||| || || |||||||| || || |||| Sbjct 233761 TCCTTGTGCACGTTCGAGATGGCAATGCGAGCAGCAAGGATGGCATAGTCTGGGTGTT 233704 >seq1026 Length=25707 Score = 105 bits (116), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || ||||||||||| || || ||||| | || | ||||||||| || ||||| Sbjct 12649 CAAGCAAAATCGCAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGG 12708 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| | ||| ||||| || ||||| || ||||| ||||| || || || ||||| Sbjct 12709 CCGGGCATCATGCCTCGCTTCTTCAGCCAGAAGATGGAAGCAAAGGAGCCGGAGAAGAAG 12768 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGT 32837 || || || ||||| || || || | || | ||| | | ||| | |||| | Sbjct 12769 ATACCCTCAACTGCGGCGAAAGCGACGAGACGTTCTGCGAAGACGGAGTCCTTGTCTTCG 12828 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTT 32866 ||||| ||||||| ||||||||||| Sbjct 12829 ATCCATCGAAGAGCCCAGTCGGCCTTCTT 12857 >seq736 Length=77482 Score = 95.1 bits (104), Expect = 2e-14 Identities = 171/244 (70%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 |||||| ||||||||| ||||| | | ||| ||||||| ||||| | || || | Sbjct 55987 CATTTCGCTATGAATGTTCTCAATCATCGTCTGATATCCGTAAAAGCACCGTGCTTCTGC 56046 Query 33014 AATCTGTACTTCTGTACAAAATCGT-TCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 | |||| || || | | ||||| | | | ||||||||||| || || ||||| | Sbjct 56047 ATTCTGAACCTCGTTCGAGAATCGCATATTC-AAATTTTCATTGACAATGCCGTCCGATG 56105 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGTGTTAGTTTATT- 33130 | ||||| |||||||| ||||| ||||||| ||| | |||| ||||| | || || || Sbjct 56106 CGGCAAAGAACGCCAAGACATGACTTATAAAGTATCTCTCGTCCTGGT-TGAGCTTGTTC 56164 Query 33131 --CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 ||| || || || || | | ||| || ||||| | ||||| || || ||||| Sbjct 56165 TCCCAGTCGCCTATGTCCTTCGCAAGATCGACCTCTTCAGCGGTCCAGAACGAAGCCTCA 56224 Query 33189 GCCT 33192 |||| Sbjct 56225 GCCT 56228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633616840354400