Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1416 107 2e-18 seq999 98.7 9e-16 >seq1416 Length=13108 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | ||||| || | ||||| ||||||||||||| || Sbjct 8288 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACTCTCGAAGTGGAGTCCTCC 8229 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||||||| | || || ||| ||||| || || ||||| ||||| || Sbjct 8228 GACACTATCGAGAACGTCAAAACGAAGATCCAAGACAAGGAGGGTATTCCCCCTGATCAG 8169 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || || || || || |||| ||| || | ||| ||||| Sbjct 8168 CAACGTCTCATCTTTGCGGGGAAGCAGTTGGAGGATGGTCGTACGCTCTCCGACTACAAC 8109 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || | ||||| Sbjct 8108 ATTCAGAAGGAGTCGACCCTCCACCTCGTGCT 8077 Score = 102 bits (112), Expect = 7e-17 Identities = 127/172 (74%), Gaps = 8/172 (5%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 |||||||||||| ||||| |||||||||||||| || ||||||| |||| || || || Sbjct 9450 AACAATGCAAATCTTTGTGAAGACTTTGACCGGCAAGACCATCACGCTCGAGGTCGAATC 9391 Query 25055 GTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 || ||||| ||||| |||| || | || | ||| ||||| ||||| ||||| | Sbjct 9390 TTCCGACACGATCGAGAACGTCA---AAACCAAGATTCA-GGACAAGGAAGGCATTCCCC 9335 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCAC 25162 ||||||| || || | || || ||||| || || | || || | ||| || Sbjct 9334 CTGACCAGCAACGTCTCATCTTCGCCGGGAAGCAGCTTGAGGACGGTCGTAC 9283 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || || || | ||||| | || |||||||| || Sbjct 8516 ATGCAAATCTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCCTCC 8457 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| ||||| || || || ||||| Sbjct 8456 GACACGATCGAAAACGTGAAGACGAAGATCCAGGACAAGGAAGGAATCCCCCCCGACCAG 8397 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || |||||||||||| | ||||| | ||||| | ||| ||||| Sbjct 8396 CAACGTCTCATCTTCGCCGGCAAACAACTTGAAGACGGCCGCACCCTCTCCGACTACAAC 8337 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || ||| | || || Sbjct 8336 ATCCAGAAGGAATCCACCCTCCATCTCGTCCT 8305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 25036 TCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACA 25095 |||| | || || || ||||| ||||| |||||| ||||| || ||| |||| Sbjct 8707 TCACCCTGGAGGTCGAATCGTCGGACACCATCGAGAATGTGAAGACGAAGATCCAGGACA 8648 Query 25096 AAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 | || || || || || ||||| || || | || || |||||||||||| | || || | Sbjct 8647 AGGAGGGTATCCCGCCCGACCAGCAACGTCTCATCTTCGCCGGCAAACAACTCGAGGACG 8588 Query 25156 ATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 |||||| | ||| ||||| || ||||| |||||||| || || Sbjct 8587 GCCGCACTCTCTCCGACTACAACATCCAAAAGGAATCCACCCTTCA 8542 >seq999 Length=50871 Score = 98.7 bits (108), Expect = 9e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 25048 TGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTC 25107 ||||| | || ||||| ||||| ||||| |||||| |||||||||| |||| Sbjct 18109 TGGAGACCTCCGACACGATCGAAAACGTGAAGACGAAAATCCAGAACAAAGAAGGCATTC 18050 Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167 | |||||||| || || | || || |||||||||||| | || || || |||||| | Sbjct 18049 CCCCTGACCAGCAACGTCTCATCTTCGCCGGCAAACAACTCGAGGACGACCGCACTCTCT 17990 Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 ||| ||||| || ||||| |||||||| || || Sbjct 17989 CCGACTACAACATCCAAAAGGAATCCACCCTTCA 17956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433317891811910