Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1416 150 2e-31 seq999 107 2e-18 seq1169 91.5 1e-13 >seq1416 Length=13108 Score = 150 bits (166), Expect = 2e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| || ||| ||||||| |||||||| || || Sbjct 8288 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACTCTCGAAGTGGAGTCCTCC 8229 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | ||||| || || |||||||||||||||||||| || ||||| Sbjct 8228 GACACTATCGAGAACGTCAAAACGAAGATCCAAGACAAGGAGGGTATTCCCCCTGATCAG 8169 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || ||||| |||||| || || ||||||| |||||| Sbjct 8168 CAACGTCTCATCTTTGCGGGGAAGCAGTTGGAGGATGGTCGTACGCTCTCCGACTACAAC 8109 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 8108 ATTCAGAAGGAGTCGACC 8091 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| | || || || || |||| ||||| ||||| || || Sbjct 8516 ATGCAAATCTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCCTCC 8457 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || |||||||| || || || ||||| || Sbjct 8456 GACACGATCGAAAACGTGAAGACGAAGATCCAGGACAAGGAAGGAATCCCCCCCGACCAG 8397 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||||||||| | || || ||||||| ||||||| |||||| Sbjct 8396 CAACGTCTCATCTTCGCCGGCAAACAACTTGAAGACGGCCGCACCCTCTCCGACTACAAC 8337 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || ||||||||| | ||| Sbjct 8336 ATCCAGAAGGAATCCACCCTCCAT 8313 Score = 113 bits (124), Expect = 4e-20 Identities = 147/205 (72%), Gaps = 7/205 (3%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGG-------TCACTCTTGAAGTGGA 22271 |||||||| || || ||||| | || || |||| |||| || || || || Sbjct 8751 ATGCAAATCTTCGTCAAAACGCTCACGGGAAAAANNNNNNNNNNTCACCCTGGAGGTCGA 8692 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 | | | || ||| | || || | || || || || |||||||||||||| || || Sbjct 8691 ATCGTCGGACACCATCGAGAATGTGAAGACGAAGATCCAGGACAAGGAGGGTATCCCGCC 8632 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 ||| || |||||||| || || ||||||||||| | ||||| |||||| ||||||| Sbjct 8631 CGACCAGCAACGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACTCTCTCCGA 8572 Query 22392 TTACAACATTCAAAAAGAATCCACC 22416 |||||||| ||||| ||||||||| Sbjct 8571 CTACAACATCCAAAAGGAATCCACC 8547 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || || || || | || || || || |||| | || || || | | Sbjct 9070 GATGCAAATCTTCGTGAAGACCCTTACTGGCAAGACCATCACGTTGGAGGTCGAGTCTTC 9011 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || || |||| || ||||| |||||||||||||| || ||||| || Sbjct 9010 CGACACCATCGAGAATGTCAAGACCAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCA 8951 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGA 22373 |||||||| || || |||||||| ||| | ||||| Sbjct 8950 GCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGA 8915 >seq999 Length=50871 Score = 107 bits (118), Expect = 2e-18 Identities = 143/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 || ||||| || || ||||| | || || || || || ||||| |||| ||| || Sbjct 18155 ATACAAATCTTCGTCAAAACGCTCACGGGAAAGACAATC---CTTGAGATGGAGACCTCC 18099 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || ||||| || |||| || || ||||| || || || Sbjct 18098 GACACGATCGAAAACGTGAAGACGAAAATCCAGAACAAAGAAGGCATTCCCCCTGACCAG 18039 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||||||||| | ||||| ||||||| ||||||| |||||| Sbjct 18038 CAACGTCTCATCTTCGCCGGCAAACAACTCGAGGACGACCGCACTCTCTCCGACTACAAC 17979 Query 22399 ATTCAAAAAGAATCCACC 22416 || ||||| ||||||||| Sbjct 17978 ATCCAAAAGGAATCCACC 17961 >seq1169 Length=14909 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| | || || || || |||| ||||| ||||| | || Sbjct 5545 ATGCAAATCTTCGTCAAAACGCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCGTCC 5604 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | ||||| || || |||||||||||||| ||||| || || || Sbjct 5605 GACACCATCGAGAACGTCAAAACGAAGATCCAAGACAAGGAGGGCATTCCCCCTGACCAG 5664 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGA 22373 |||| ||| || || ||| |||| ||| | ||||| Sbjct 5665 CAACATCTCATCTTCGCCAGCAAGCAGCTCGAGGA 5699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419718209057410