Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1785 203 7e-47 seq1026 102 2e-16 seq1838 87.8 4e-12 >seq1785 Length=38701 Score = 203 bits (224), Expect = 7e-47 Identities = 677/1045 (65%), Gaps = 45/1045 (4%) Strand=Plus/Minus Query 279331 AGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGA 279390 ||||| |||| |||||||| || || |||| || ||||| ||||| || ||||| | Sbjct 2575 AGGAGGATGAG---GGTGAGGAGCTTTGCAACTGCGAGTTCTCTCTCGCTTACGGTGGTA 2519 Query 279391 AGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCG 279450 ||| |||| ||| ||| ||| | || | ||||| | || || ||||| || Sbjct 2518 TGATCTTGCTCAACAACACCAAGCTCCGCCTCCACCGTGGTCAACGCTACGGTCTTTGCG 2459 Query 279451 GTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAG 279510 ||||||| || | ||||||| ||| || ||||||||||| || ||||| ||| | |||| Sbjct 2458 GTCCCAACGGTACCGGTAAGACCACCCTCATGCGCGCCATCGCCAACGGCCAGGTCGAAG 2399 Query 279511 GATTTCCTAACGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTC 279570 | || ||| ||| || | | ||| || | || |||||| || || | || | Sbjct 2398 GCTTCCCTCCCGCGGATGTCCTTAAGACCGTCTTCGTCGAGCACAACCTCCAGGCCGACC 2339 Query 279571 TCTCGGATAGCACTGTGTTCGACTTCCTAACGTCTGACAATCAGGTTA-TGGAAATCAGC 279629 | || | || || | || ||| || ||| || || | || Sbjct 2338 AAACTGAAATGACCGTTCTTGAGTTCGCCCTCTCCGACCCCACCCTTGCTGCGAGGAAG- 2280 Query 279630 TCTCCTGAGGAAATCATCCAGAAACTGGAGGCCAATGGTTTTGATGAAAGAATGCGTAAT 279689 || || | |||| || || | | ||||||||||| || |||| | Sbjct 2279 ------GACGAGACCATCACGACCCTCAAATCAGTCGGTTTTGATGAC-GA--GCGTC-T 2230 Query 279690 CTGCCAGTAGGT----TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGC 279745 | |||| | || || || || |||||||||||||||||||| | || | || || Sbjct 2229 CGCCCAGAACGTCGTTTCCCTCTCTGGTGGTTGGAAGATGAAGCTCGAGCTTGCGCGTGC 2170 Query 279746 CATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCAC 279805 ||| || | | ||||| | || || || || || || ||||||||| ||||| | | Sbjct 2169 CATGCTCCAGAACGCCGACATTCTCCTCCTCGACGAACCCACCAACCACTTGGACCCTAA 2110 Query 279806 CAACGTAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGT 279865 ||||| ||||| || |||||| | || | || || | ||| | || || Sbjct 2109 GAACGTCCAATGGCTCGTCGACTACCTCAACAACATCCCCAACGTCACCTCCATGATCGT 2050 Query 279866 CTCTCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG---CA 279922 ||| |||||||| |||||||| || || ||| | |||||| ||||| ||| | Sbjct 2049 CTCCCACGACTCCGGCTTCCTTGACAAAGTCTGCACCAACATCATCCACTACGAGAACCG 1990 Query 279923 AAATCTGAAGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGA 279982 || || |||| || |||| || ||| |||| ||||| | |||||||| Sbjct 1989 TAAGCTTAAGCGCTACAAG------GGTAACTTGTCCAAGTTCGTCGAGGCCCGCCCTGA 1936 Query 279983 GGCGGCCGCCTACTATGACCTGAAGGACGCCACCG---CCAAGTGGGAATTCCCTGAGCC 280039 ||| |||||||| || || |||||| | ||||| | ||||||||||| Sbjct 1935 GGCCAAGGCCTACTACGAACT---CTCCGCCACTGAGTTCAAGTTCAAGTTCCCTGAGCC 1879 Query 280040 AGGGTTTCTGGAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTC 280099 || || || ||||| |||| || ||||| || ||| | ||| | ||||| Sbjct 1878 TGGATTCCTTGAGGGTATCAAGTCTAAGGACAAGGCTATCCTTAAGATGATGCGCGTCAA 1819 Query 280100 CTTTGCTTATCCCAATGGCCCCAACA-------TCTTCAGCAGTGTCAACTCGCAGGTTT 280152 ||| | || | | ||| ||| || ||||| || ||| | || | Sbjct 1818 CTTCACCTA---CGAAGGCACCACCAAGCAGATCCTTCA-CAACATCACCCTCCAATGCT 1763 Query 280153 CTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCA 280212 | | ||||| || | | ||||| || ||||| ||||| ||||| || ||||| || | Sbjct 1762 CCCTCAACTCCCGCGTCGCCGTCATCGGTCCCAACGGTGCCGGTAAATCCACCCTCATTA 1703 Query 280213 AAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGC 280272 | ||| |||| || ||| | ||||| || || || |||||||| |||||| | | Sbjct 1702 AGGTCTTGACCGGTGAGCTCATCGCCACCGAAGGTGATGTCTGGAAGCACCCCAACCTCC 1643 Query 280273 GGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTC 280332 | | || |||||||| || ||||| ||||||||| ||||| | |||||||||| |||| Sbjct 1642 GTGTCGCCTACGTCGCCCAACACGCCTTCCACCACGTCGAGCAGCACCTGGACAAAACTC 1583 Query 280333 CTAACCAATACATTCAGTGGCGCTA 280357 | ||| | ||||| | ||||| || Sbjct 1582 CCAACGAGTACATCCGCTGGCGTTA 1558 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 280690 CCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTG 280749 ||||||| | || ||||| || || |||||||| || ||||| || |||||||| | | Sbjct 1213 CCGAGTTCGCCACCCACTCCCGTATCCGCGGTCTCTCCGGAGGTCAAAAGGTCAAGGTCG 1154 Query 280750 TCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACT 280809 || |||| || || ||||| | |||| ||| || |||| |||||||| || ||||||| Sbjct 1153 TCCTCGGTGCCGCCATGTGGAACAACCCCCACATGCTCGTCCTCGACGAACCCACCAACT 1094 Query 280810 ATCTGGACCGCGAGAGCCTGGGCGCTCTGAGTGCTGCTCTGGACACATTTGGCGGCGGCG 280869 | || ||||| || ||| || || || | || | | || ||| || || | Sbjct 1093 ACCTCGACCGTGACTCCCTCGGTGCCCTTGCCGGCGCCATCCAGGAATATGGTGGTGGTG 1034 Query 280870 TCGTAGTCATTTCTCAC 280886 |||| ||||||||||| Sbjct 1033 TCGTCATCATTTCTCAC 1017 >seq1026 Length=25707 Score = 102 bits (112), Expect = 2e-16 Identities = 266/401 (66%), Gaps = 6/401 (1%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||||| || || || | |||||||||||| ||||| ||| | Sbjct 12382 TCAAAGAAGTTGGTCTTGCCCTGCAAGGAAATCAACTCCATGAAGTCAAAGGGATTTTCG 12441 Query 251623 GCATTGTACTGCTT-GGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAG 251681 || ||||| ||||| |||| ||||| || |||| || ||||| || || ||||| | Sbjct 12442 GCGTTGTAGTGCTTGGGGAATCCCAAG-GCGACGAGGAGACGGTCAGCGACGAACTCGAT 12500 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAA--GGAATTGCCTCACAG 251739 ||| | | ||| || | ||||||||||| || | | ||| || | || || | Sbjct 12501 GTACCGGCACATGAGGACGGAGTTCATGCCGAT--GAGGGCAACGGGGAGAGCGTCGGTG 12558 Query 251740 ATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC 251799 | |||||| | |||| || | || || || | ||| || | | ||| Sbjct 12559 AGGAATTCTTGTTCGATGCCCACCGCTTCGGTGATGATTTGGAGAACGGTTTCATGAGCG 12618 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 |||| | | || | || | | ||||| |||| | ||| || || ||||| Sbjct 12619 GGCTTTTGGTTGAGTTGTGTGAAGAGGAGGCAAGCAAAATCGCAGTGGAGGCCTTCGTCA 12678 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||||| |||||||| | | ||||| ||||||| || || ||| | |||||| Sbjct 12679 CGGGAGATGAGTTCGTTGGAGAAAGTGAGGCCGGGCATCATGCCTCGCTTCTTCAGCCAG 12738 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 ||||| | |||||| || ||||| | | |||||| || Sbjct 12739 AAGATGGAAGCAAAGGAGCCGGAGAAGAAGATACCCTCAAC 12779 >seq1838 Length=37140 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 280242 GAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTC 280301 || |||||||||||||||||||||||| | || || | |||||||||||| || || ||| Sbjct 6660 GAAGGGTCCGTTTGGAAGCATCCCAACCTTCGTATCGGTTACGTCGCTCAACATGCCTTC 6719 Query 280302 CACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357 || || | | | || ||||| | || ||| ||||| ||| | || ||||| || Sbjct 6720 CATCATTTGAACCAGCATCTGGAAAAGAGTCCGAACCAGTACCTGCAATGGCGTTA 6775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027811594229674