Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1026 241 2e-58 seq972 118 2e-21 >seq1026 Length=25707 Score = 241 bits (266), Expect = 2e-58 Identities = 361/501 (72%), Gaps = 15/501 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCG-ACGCAAC 42691 ||||||||| |||||||| |||||||| || |||||||| || | | || | Sbjct 12869 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTTCGATGGATCGA-AGACAAGGACTCCGT 12811 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||| || | || || || || |||| || ||||| ||||||||||| ||| |||| Sbjct 12810 CTTCGCAGAACGTCTCGTCGCTTTCGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTT 12751 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 || |||||||||||||| ||| || ||| | ||||||||| ||||| ||||| |||| Sbjct 12750 TGCTTCCATCTTCTGGCTGAAGAAGCGAGGCAT-GATGCCCGGCCTCACTTTCTCCAACG 12692 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 |||||||| | | ||||| || || || | || ||||| |||||||| ||| | | Sbjct 12691 AACTCATCTCCCGTGACGAAGGCCTCCACTGCGATTTTGCTTGCCTCCTCTTC---ACAC 12635 Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 | |||| || |||||| | | || || | |||||||| || || |||| | Sbjct 12634 AACTCAACCAAAAGCCCGCTCATGAAACCGTTCTCCAAATCATCACCGAAGCGGTGGGCA 12575 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACC 42990 |||| | || |||||||| | | || ||||| |||| ||||||||||| || || Sbjct 12574 TCGAACAAGAATTCCTCACCGACGCTCTCCCCGTTGCCCTCATCGGCATGAACTCCGTCC 12515 Query 42991 TCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GT-GCCAGATGGGTCTCAG 43048 |||||||| ||||||| ||| |||||| |||| |||||| || ||| |||| || Sbjct 12514 TCATGTGCCGGTACATCGAGTTCGTCGCTGACCGTCTCCTCGTCGCC--TTGGGATTCCC 12457 Query 43049 CCGCCTCTACAACACGCCG--TGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 | | ||||| |||||| ||||| ||||| |||||| || || ||| ||||| Sbjct 12456 CAAGCACTACA--ACGCCGAAAATCCCTTTGACTTCATGGAGTTGATTTCCTTGCAGGGC 12399 Query 43107 AAGACCAACTTTTTCGAGAAG 43127 ||||||||||| || |||||| Sbjct 12398 AAGACCAACTTCTTTGAGAAG 12378 Score = 91.5 bits (100), Expect = 3e-13 Identities = 198/289 (69%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 42301 TCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 ||||| |||||||| ||||| | || | || |||||| || || || | ||||| Sbjct 13265 TCTGGCAAATGTACAAAAAGGCCGAAGCT-TCTTTCTGGACTGCTGAAGAAGTCGACCTT 13207 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGA-ACGA--AAAGTTT-TTCCTCAA 42415 |||||||| || || |||||| || |||| | |||| || ||| ||| || Sbjct 13206 TCCAAGGACCTGGTCGACTGGGAAA-ACCGTCTCAATGACGACGAACGTTACTTCATCTC 13148 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 | | || ||||||||||| || |||||||| || ||||| || ||||| | | | Sbjct 13147 CCGCGTCCTTGCCTTCTTCGCTGCGTCTGACGGTATCGTCAACGAAAACCTCGTCGAGCG 13088 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| || || || ||| | ||| || ||||||||||| ||||| ||||| || Sbjct 13087 CTTCAGCAATGAAGTCCAGATCCCTGAAGCCCGCTGCTTCTATGGCTTTCAGATCATGAT 13028 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC 42584 |||||| | ||| ||| ||||| | || || |||| |||||| Sbjct 13027 TGAGAACATTCACAGTGAAATGTACTCGCTCTTGATCGACACCTACATC 12979 >seq972 Length=266462 Score = 118 bits (130), Expect = 2e-21 Identities = 300/452 (66%), Gaps = 17/452 (4%) Strand=Plus/Minus Query 244148 GGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGAC 244207 || |||| || || ||||||| || || |||| ||| || ||||||||||| | Sbjct 235607 GGTTCGAAGCATTCGTTGTTGCCTAGGATTTGCGAGGTGGAGGCGGTCGGCATGGGTGCG 235548 Query 244208 ACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCC 244267 || || || |||||| | ||||| | ||| || || ||| ||| ||||||| Sbjct 235547 ACGAGGAGGGAGTTCCTGATACCGTGTTTGGCGATTTGGGATCGGAGTTCGGCCCAGTCC 235488 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 || | ||||| ||| | |||| ||||||||| || || | |||||| Sbjct 235487 CATCGGTCCGAG--GTCTTGACGTT-------CCACATGTCTGGTTGGAGGACACCCTTG 235437 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTC 244387 ||||| ||||| ||||| || || || | || || ||| |||| || || Sbjct 235436 CTGACAGGGCTTCCCTCATAAGTTTCATACGTCCCTTCCTTCTGAGCCAACTCGCAAGAA 235377 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT-T 244446 | || ||||| || |||| || ||||| ||| ||| | | ||||||| | Sbjct 235376 GCTTCAAGGGCAGCAAAGTACATCGTCTCACTGATGTCGCGGTTGAGCTGACGGGCCTCT 235317 Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506 || | |||||| |||| |||| | ||||| ||||||| || || || ||||| | Sbjct 235316 TGCGAATC-GAAGGGCATGCGCATCTTAATGAAAGCGTCGGCAAGACCTTGGACGCCCAG 235258 Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGCTTCGGGCACGGGGTAAAAGTT 244563 |||||||| | ||| ||| |||| || ||| ||||||||| || ||||| |||| Sbjct 235257 ACCGATGGGGCGGTGGCGCATGTTCGACTTGCG---GGCTTCGGGGACCGGGTAGTAGTT 235201 Query 244564 GCCGTCGATCACCTTGTTGAGGTTGCGGGTGA 244595 | ||| || | ||||||||||| ||||| Sbjct 235200 GATGTCAATGATTTTGTTGAGGTTCTTGGTGA 235169 Score = 116 bits (128), Expect = 7e-21 Identities = 164/225 (73%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| |||||| || || ||||| || | | || | |||||||| || |||||| Sbjct 235013 GCCAAGTTGCACACAGCAACCTCATCAGGAGAAGAATATTCAACAATCTCAGTACAGAGG 234954 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 ||||||||||| ||||| || |||| || || ||||| ||| ||| || ||||||||| Sbjct 234953 TTACTGCACTTAATGGTTCCGAGGTTTTGCTGGTTGGATTTGCGGTTACACGCGTCCTTG 234894 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTC 244866 ||||||||| ||||| | || |||||| ||| | | | || ||| || ||| || | Sbjct 234893 TAGAGCATGTAGGGCACACCCGTCTCGGTCTGCGATTCCAAGATCGC-GTACCACAGCTT 234835 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC-CTCGTAGC 244910 |||||||| ||| |||| ||| |||| ||| ||||||| Sbjct 234834 TTGGGCCTTGACGGTCTTGCGGGCCAACCCCT-TGCGTTCGTAGC 234791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944316606684640