Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1416 161 2e-34 seq999 123 6e-23 >seq1416 Length=13108 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||| | ||| ||| || ||||| || ||||||| | Sbjct 8290 CCACCACGGAGACGGAGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 8349 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | |||||| || |||||||| ||||| || || ||| Sbjct 8350 AGGGTGCGGCCGTCTTCAAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGGGGG 8409 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || |||||||| |||| ||||||||||| || | ||| || || || Sbjct 8410 ATTCCTTCCTTGTCCTGGATCTTCGTCTTCACGTTTTCGATCGTGTCGGAGGACTCCACC 8469 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| || || || |||||||| || ||||| Sbjct 8470 TCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAGATTTGCAT 8516 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| ||||| || | || || || || || || ||||||| | Sbjct 8062 CCACCACGGAGACGAAGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAG 8121 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || || || || || || || || || ||||| ||||| || ||| | || Sbjct 8122 AGCGTACGACCATCCTCCAACTGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGGGGA 8181 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || ||||| |||| ||| ||||| || |||| ||| || || ||| Sbjct 8182 ATACCCTCCTTGTCTTGGATCTTCGTTTTGACGTTCTCGATAGTGTCGGAGGACTCCACT 8241 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| ||||| || ||||| || || || ||||| Sbjct 8242 TCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 8288 Score = 102 bits (112), Expect = 2e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || ||||| || | || || || |||||||| ||||| || || | || Sbjct 9279 GAGGGTACGACCGTCCTCAAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCAGGGGG 9338 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || ||||| || || | ||| ||||| || || | ||| ||||| || Sbjct 9339 AATGCCTTCCTTGTCCTGAATCTTGGTTTTGACGTTCTCGATCGTGTCGGAAGATTCGAC 9398 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||||||||| ||||| ||||||| |||||| || || || |||||| Sbjct 9399 CTCGAGCGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAGATTTGCATT 9447 >seq999 Length=50871 Score = 123 bits (136), Expect = 6e-23 Identities = 164/227 (72%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||| | || ||||| |||| ||| ||| |||||||| || ||||||| | Sbjct 17932 CCACCACGGAAACGGAGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAG 17991 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||| || | |||||| || |||||||| ||||| || || | || Sbjct 17992 AGAGTGCGGTCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGA 18051 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| | ||||||||||| ||||||||||| || | ||| | || | Sbjct 18052 ATGCCTTCTTTGTTCTGGATTTTCGTCTTCACGTTTTCGATCGTGTCGGAGGTCTCCATC 18111 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||| ||||| || || || || |||||||| || || || Sbjct 18112 TCAAG---GATTGTCTTTCCCGTGAGCGTTTTGACGAAGATTTGTAT 18155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179625471187692