Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1785 208 2e-48 seq1026 134 3e-26 seq1838 84.2 5e-11 seq834 84.2 5e-11 >seq1785 Length=38701 Score = 208 bits (230), Expect = 2e-48 Identities = 1003/1577 (64%), Gaps = 67/1577 (4%) Strand=Plus/Plus Query 332810 AATGATCACGACACCTCCACCAAAGTTCTTAAGTGCTTCGGCCATTGCTCCGAGACTCTC 332869 |||||| |||||||| |||||| | | || | || |||| | || ||||| || Sbjct 1023 AATGATGACGACACCACCACCATATTCCTGGATGGCGCCGGCAAGGGCACCGAGGGAGTC 1082 Query 332870 ACGGTCAACGAAGTTGGTCGGTTCGTCCAAAACGATCACGTGGGG-TTGTTGCCATAGAG 332928 |||||| | | ||||||| |||||||| | |||| || |||||| ||||| ||| | | Sbjct 1083 ACGGTCGAGGTAGTTGGTGGGTTCGTCGAGGACGAGCATGTGGGGGTTGTT-CCACATGG 1141 Query 332929 CAGCGCCGATAACCAATTTCAGCTTTTGCCCGCCAGATAGACCACGAATGCGAGAATGAG 332988 | || |||| || | || | |||||| || || || ||||| || || || || || | Sbjct 1142 CGGCACCGAGGACGACCTTGACCTTTTGACCTCCGGAGAGACCGCGGATACGGGAGTGGG 1201 Query 332989 TTGTAAATTCAGGGTCGAGACCAACATTTGCCATATGTTCTTCCACGTTCTTTGCGGTCA 333048 | | || || | | |||||| || | || || | || ||||| ||||| | Sbjct 1202 TGGCGAACTCGGCGGGGAGACCGACGTCGATCAAGTGCTTCTCGACGTTGACGGCGGTGA 1261 Query 333049 GTGGC---TTGAACATACCGTTTGCGACGGCTTCTTTGGTGTCAATGTCGTTCAGAAGTT 333105 | || | | ||||||| | | |||| || || ||| | | | || | Sbjct 1262 GGGGGCGTTGGTACATACCCTCCTTGGCGGCCTCCTTCTCGTCGAACCATTGGACGAGCT 1321 Query 333106 TTCCGAAACCATACTCCTCGAGGCGTTCGCGAGATATCCATTGGGTAGTCTC------AT 333159 | ||||||| | ||||| || || ||||| ||||| | || ||| | Sbjct 1322 TGGCGAAACCCCAGTCCTCAAGCTTCTCACGAGAGATCCAGCTGTTACCCTCGAAGGGAA 1381 Query 333160 CGTTTTTCCACTGAACCTCGTACTCGTAAGATTTTTTCAGCTTGCGGCGACCAAGAATCT 333219 |||| ||||| |||||||||||| ||||| || ||| || ||||| | |||| Sbjct 1382 CGTTGACCCACTTAACCTCGTACTCATAAGAGCGCTTGGCCTTACGACGACCCTGGATCT 1441 Query 333220 TGTCAAGAATTTTCTTCACTCCGTCAACGACTTTAGTGTCATACATCTTCTTTAGT-TCT 333278 || | | |||| | ||||| ||| || || | | | | || | || || || Sbjct 1442 CCTCCAAGACGCGCTTCTCACCGTCGACG--TTGAG-GACCTTCTTCAT-TTGAGCCTCC 1497 Query 333279 TCTTCGTTGTT---CTTCC---TAGAAACGACGTCAAGGGTCTCTTTGTCTTCACCGGAG 333332 || ||| | | || | | | |||| || | || |||||| ||| | Sbjct 1498 TCCTCGGGGGTGAGCTGACGGTTGGCCTTGACG---AGAGCTTCACGGTCTTCTCCGTAC 1554 Query 333333 GCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGG 333392 |||||||| |||| |||| |||||| || |||| || || | ||||| ||||||| Sbjct 1555 TGGTAACGCCAGCGGATGTACTCGTTGGGAGTTTTGTCCAGGTGCTGCTCGACGTGGTGG 1614 Query 333393 AAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTTCCGTTG 333452 || || || || || ||||| || | ||| | || || |||||||| ||| || | | Sbjct 1615 AAGGCGTGTTGGGCGACGTAGGCGACACGGAGGTTGGGGTGCTTCCAGACATCACCTTCG 1674 Query 333453 GTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCCCGCACCATTTTCG 333512 ||||| | | || || | ||||||||||| ||| ||| || ||||| || Sbjct 1675 GTGGCGATGAGCTCACCGGTCAAGACCTTAATGAGGGTGGATTTACCGGCACCGTTGGGA 1734 Query 333513 CCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTGTCAAAGATTAGT 333572 || | || | | | |||||| || || ||| | | ||||| || ||| | Sbjct 1735 CCGATGACGGCGACGCGGGAGTTGAGGGAGCATTGGAGGGTGATGTTGTGAAGGATCTGC 1794 Query 333573 TTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AGCTTCATGATGGCACGGTCCTT 333631 || || || || |||| || | || | | ||| | ||| || |||||| Sbjct 1795 TTGGTGGTGCCTTCGTAGGTGAAGTTGACGC-GCATCATCTTAAGGATAGCCTTGTCCTT 1853 Query 333632 CGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGT 333691 || |||||||||| ||||| || ||||| |||||||| || || || || ||| Sbjct 1854 AGACTTGATACCCTCAAGGAATCCAGGCTCAGGGAACTTGAACTTGAACTCAGTGGCGGA 1913 Query 333692 AAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTT 333751 || ||||||| | | || || || || ||||||| ||||| || ||||| Sbjct 1914 GAGTTCGTAGTAGGCCTTGGCCTCAGGGCGGGCCTCGACGAACTTGGACAAGTTACCCTT 1973 Query 333752 GTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAG 333811 ||| ||| ||||| |||| ||||| ||||| || |||||| || ||| || Sbjct 1974 GTAGCGCTTAAGCTTACGGTTC---TCGTAGTGGATGATGTTGGTGCAGACTTTGTCAAG 2030 Query 333812 GAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTC 333871 ||| ||||||||||| || || |||| | | | |||| | |||| | ||||| || Sbjct 2031 GAAGCCGGAGTCGTGGGAGACGATCATGGAGGTGACGTTGGGGATGTTGTTGAGGTAGTC 2090 Query 333872 AATCAGCCACCTCACG---TTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAG 333928 | ||||| ||| |||| | ||| |||||||| || ||||| || || || Sbjct 2091 GACGAGCCATTGGACGTTCTTAGGGTC--CAAG-TGGTTGGTGGGTTCGTCGAGGAGGAG 2147 Query 333929 TAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCTGA 333988 | | |||||| ||||||| ||||| ||||| |||| ||||| ||||| || || || Sbjct 2148 AATGTCGGCGTTCTGGAGCATGGCACGCGCAAGCTCGAGCTTCATCTTCCAACCACCAGA 2207 Query 333989 AAGAG------TGTTAATTGGGGCAGATTGGCGCTCAATATCAAAGCCAACCGATTCTAG 334042 || | ||| |||| ||| ||||| |||||| || || |||| || Sbjct 2208 GAGGGAAACGACGTT--CTGGGCGAGA----CGCTCGTCATCAAAACCGACTGATTTGAG 2261 Query 334043 AGTAGTTACGATCT-----TTTCACGAGACCAAATGTTTTCCTTTACTTGTTCATCATTG 334097 || || | | ||| || | || | ||| || | || | Sbjct 2262 GGTCGTGATGGTCTCGTCCTTCCTCG-CAGCAAGGGT----------GGGGTCGGAGAGG 2310 Query 334098 GCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAA 334157 || ||| |||| | | ||| | || | | | | ||| | ||| || ||| | Sbjct 2311 GC---GAACTCAAGAACGGTCATTTCAGTTTGGTCGGCCTGGAGGTTGTGCTCGACGAAG 2367 Query 334158 GCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGC 334217 | || || | |||||||| | ||||| ||||| | ||| ||||| | || |||||| Sbjct 2368 ACGGTCTTAAGGACATCCGCGGGAGGGAAGCCTTCGACCTGGCCGTTGGCGATGGCGCGC 2427 Query 334218 ATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTC 334277 || || || | ||||| | ||||| || || || ||||||||||| | ||||| | Sbjct 2428 ATGAGGGTGGTCTTACCGGTACCGTTGGGACCGCAAAGACCGTAGCGTTGACCACGGTGG 2487 Query 334278 AGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAA 334337 || || | || ||||| || | || | ||||| || || ||||| || || || Sbjct 2488 AGGCGGAGCTTGGTGTTGTTGAGCAAGATCATACCACCGTAAGCGAGAGAGAACTCGCAG 2547 Query 334338 TCACACAGATCCTCACC 334354 | || || |||||||| Sbjct 2548 TTGCAAAGCTCCTCACC 2564 >seq1026 Length=25707 Score = 134 bits (148), Expect = 3e-26 Identities = 309/456 (68%), Gaps = 12/456 (3%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || || ||||||||||| | | ||||| ||||| | || ||||| || Sbjct 12809 TTCGCAGAACGTCTCGTCGCTTTCGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTT- 12751 Query 243349 TGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGA 243407 ||| ||||||| |||||| ||| ||| ||||||| |||||| | | || ||||| Sbjct 12750 TGCTTCCATCTTCTGGCTGAAGAAGCGAGGCATGATGCCCGGCCTCACTTTCTCCAACGA 12691 Query 243408 GTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCT 243467 ||||| || ||||| ||||| ||| | || | | || | | || | || Sbjct 12690 ACTCATCTCCCGTGACGAAGGCCTCCACTGCGATTTTGCTTGCCTCCTCTTCACACAACT 12631 Query 243468 CCAGAACAAGCTACCATTC--GAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 | | | |||| || || ||||| || ||||||||||| ||||| || | | | Sbjct 12630 CAACCAAAAGC--CCGCTCATGAAACCGTTCTCCAAATCATCACCGAAGCGGTGGGCATC 12573 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCA--TGCCGGCTTATTGGCATGAACTCTGAAC 243583 ||| | |||||| | ||||||| | || |||| || || ||||||||||| | | Sbjct 12572 GAACAAGAATTCCTCACCGACGCTCTCCCCGTTGCC--CTCATCGGCATGAACTCCGTCC 12515 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 ||||| | | ||||||||| ||||| || ||||| | || |||| ||||| | Sbjct 12514 TCATGTGCCGGTACATCGAGTTCGTCGCTGACCGTCTCCTCGTCGC-CTTGGGATTCCCC 12456 Query 243644 AAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 ||| |||||| || | || ||||||| ||| |||||| | ||||| | || || || Sbjct 12455 AAGCACTACAACGCCGAAAATCCCTTTGACTTCATGGAGTTGATTTCCTTGCAGGGCAAG 12396 Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 || |||||||| || ||| ||| | || |||||| Sbjct 12395 ACCAACTTCTTTGAGAAGAAGGTCGGGGAGTATCAA 12360 >seq1838 Length=37140 Score = 84.2 bits (92), Expect = 5e-11 Identities = 176/262 (67%), Gaps = 3/262 (1%) Strand=Plus/Minus Query 333733 ACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAG 333792 |||| || || || |||||||| | | || |||| || | || ||||| || ||| Sbjct 6244 ACTCAGAAAGGTTCCCCTTGTAATACGCCAACTTT---TTCCGCTCATAATGAATGATAT 6188 Query 333793 AGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCT 333852 ||||| ||| ||| || || ||||| |||||||||||||| | ||| | || || Sbjct 6187 CAGTGCACACATTGTCCAGAAAGCCGGAATCGTGTGACACAATTAAAGACGTCATGTTCT 6128 Query 333853 TAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCG 333912 | || | | || | | || ||| ||||| | ||| | ||||||||| | Sbjct 6127 TCTGGCTCAACAAAAACTGCTCCAACCATGCGACGTTCGTAACATCCAAATGGTTGGTAG 6068 Query 333913 GCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCA 333972 | ||||| ||||| || | | ||||| ||||| ||||| ||||| | | |||| Sbjct 6067 GTTCGTCGAGAAGAAGAATATCCGCGTTATACAGCATAGCACGAGCAAGCTCCAACTTCA 6008 Query 333973 TTTTCCACCCTCCTGAAAGAGT 333994 | ||||| || || ||||| || Sbjct 6007 TCTTCCATCCACCGGAAAGCGT 5986 >seq834 Length=203524 Score = 84.2 bits (92), Expect = 5e-11 Identities = 177/255 (69%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 298199 TCGGTCATGATCATCACATGACCGTAACG-AAGC-GAGGACGTGTCTTTGTACACTTTAC 298256 || ||||||||||||| ||| |||||||| |||| | || | ||| || ||||| | Sbjct 45234 TCAGTCATGATCATCAAATGGCCGTAACGCAAGCTGTCCACAT-TCTCA-TAAACTTTTC 45291 Query 298257 CGGTTTGAAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG 298316 || || | || | |||||||||| ||| |||||||| | || ||||| ||| Sbjct 45292 CGTGCTGCAACCCCATGATTTGTTTGATCGCGTTGATTTCTCCATTTGCAGTGAT--TTG 45349 Query 298317 C-CACGGAT-GCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCT 298374 || | | || || || ||||| | | ||||| || |||||||||||||| | | Sbjct 45350 AGCATGAGTAGCTTCCCGAACATTGAGCAACTTTCCGCGCAGAGGGAACACTCCGAAATT 45409 Query 298375 CTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGT 298434 || || |||||||| ||||| || | ||||| ||| |||||||| || || || Sbjct 45410 GTCCCGTCCGACCACCGACAGGCCGGAAATTGCTGTGGTCTTAGCGGAATCTCCTTCGGT 45469 Query 298435 CAGAATGAGAGTGCA 298449 || || | ||||| Sbjct 45470 CAAGATTAACGTGCA 45484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102852953935900