Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1026 132 6e-26 seq972 87.8 2e-12 seq834 82.4 9e-11 >seq1026 Length=25707 Score = 132 bits (146), Expect = 6e-26 Identities = 303/450 (67%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 || ||||| ||| |||||| |||||||| ||||| || | |||| || |||||| Sbjct 12364 TACTCCCCGACCTTCTTCTCAAAGAAGTTGGTCTTGCCCTGCAAGGAAATCAACTCCATG 12423 Query 125819 AAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGAC 125876 || ||||| || || | | ||| | ||| || | ||||| | |||||||| Sbjct 12424 AAGTCAAAGGGATTTTCGGCGTTGTAGTGCTTGG-GGAATCCCAAGGCGAC-GAGGAGAC 12481 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 | || | |||| |||| |||||| |||| | |||||||| ||||||||| | Sbjct 12482 GGTCAGCGACGAACTCGATGTACCGGCACATGAGGACGGAGTTCATGCCGATGAGGGCAA 12541 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 ||||| ||||| || ||| | | || || |||| ||||| | ||| | Sbjct 12542 CGGGGAGAGCGTCGGTGAGGAATTCTTGTTCGATGCCCACCGCTTCGGTGATGATTTGGA 12601 Query 125997 GAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCT-TGAAGAGTTCCACGGCAAACTCT 126055 ||| ||| || | || || ||| | | | ||||||| ||||| || Sbjct 12602 GAACGGTTTCATGAGCGGG-CTTTTGGTTGAGTTGTGTGAAGAGGAGGCAAGCAAAATCG 12660 Query 126056 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGA 126115 |||||| || |||||||||||||||||||| || ||||| || || ||||| | Sbjct 12661 CAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGGCCGGGCATCATG 12720 Query 126116 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 || |||||||||| |||||| || | | ||| || || ||||||||||| ||||| || Sbjct 12721 CCTCGCTTCTTCAGCCAGAAGATGGAAGCAAAGGAGCCGGAGAAGAAGATACCCTCAACT 12780 Query 126176 CACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||||| || | |||||| || || ||| Sbjct 12781 GCGGCGAAAGCGACGAGACGTTCTGCGAAG 12810 >seq972 Length=266462 Score = 87.8 bits (96), Expect = 2e-12 Identities = 309/476 (65%), Gaps = 14/476 (3%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| |||| |||||| || || ||||| || ||||| || | |||||| | ||||||| Sbjct 235625 TAGATGTTGGACGTGTAGGGTTCGAAGCATTCGTTGTTGCCTAGGATTTGCGAGGTGGAG 235566 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT-TTTCCCTA-ATGCGTT 114059 || || ||||||||||| | ||| ||| ||| | || ||| | ||| | | || | | Sbjct 235565 GCGGTCGGCATGGGTGCGACGAGGAGGGAGTTCCTGATACCGTGTTTGGCGATTTGGGAT 235506 Query 114060 CCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGA 114119 | ||| || ||||||| | | | |||| | | |||||| || |||| Sbjct 235505 C--GGAGTTCGGCCCAGTCCCATCGGTCCGAGGTCTTGACGTTCCACATGTCTGGTTGGA 235448 Query 114120 GGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCA 114179 ||| ||| | | | | || ||||||| | || || || | || || || |||| Sbjct 235447 GGACACCCTTGCTGACAGGGCTTCCCTCATAAGTTTCATACGTCCCTTCCTTCTGAGCCA 235388 Query 114180 ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATG-CGAGCATTCATT 114238 | ||| | || || ||||| || ||||| |||||| ||| || | | | Sbjct 235387 ACTCGCAAGAAGCTTCAAGGGCAGCAAAGTACATCGTCTCACTGATGTCGCGGTTGAGCT 235328 Query 114239 GCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCT 114298 | | |||||| | ||||| || | | || | ||| || | || || |||||| Sbjct 235327 GAC-GGGCCTCTTGCGAATCGAAGGGCATGCGCATCTTAATGAAAGCGTCGGCAAGACCT 235269 Query 114299 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC----AC 114354 ||||| || || || || ||||| || | ||| || ||||| |||| || | || Sbjct 235268 TGGACGCCCAGACCGATGGGGCGGTGGCGCATGTTCGACTT----GCGGGCTTCGGGGAC 235213 Query 114355 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 114410 || || | || | || || | | || || || |||||||| ||||| |||| Sbjct 235212 CGGGTAGTAGTTGATGTCAATGATTTTGTTGAGGTTCTTGGTGACGACCTTGGTGA 235157 >seq834 Length=203524 Score = 82.4 bits (90), Expect = 9e-11 Identities = 202/301 (67%), Gaps = 8/301 (3%) Strand=Plus/Plus Query 172651 ATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACATCTTGATACTCCTTAC 172709 ||| ||||| ||||| | | || || || ||||| | |||| | ||| | || | Sbjct 45233 ATCAGTCATGATCATCAAATGGCCGTAACGCAAGCT-GTCCACATTCTCATAAACTTTTC 45291 Query 172710 CCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCG 172769 | || || | |||| ||| | |||| | |||| ||| |||| |||| ||| | Sbjct 45292 CGTGCTGCAACCCCATGATTTGTTTGATCGCGTTGATTTCTCCATTTGCAGTGATTTGAG 45351 Query 172770 CCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGAT 172829 | | ||| || || ||||| |||| || || ||||||||||| ||| | | | Sbjct 45352 CATGAGTAGCTTCCCGAACATTGAGCAACTTTCCGCGCAGAGGGAACACTCCGAAATTGT 45411 Query 172830 CACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCA 172889 | || || ||||| || || || | || ||| |||||| |||||||| || || |||| Sbjct 45412 CCCGTCCGACCACCGACAGGCCGGAAATTGCTGTGGTCTTAGCGGAATCTCCTTCGGTCA 45471 Query 172890 CGATGAGCGTACA---CTTTCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACT 172946 ||| | ||| || ||||| ||| | ||||| || || ||||| ||| |||||| Sbjct 45472 AGATTAACGTGCAGTGTTTTCC--ATTACG-TGTCCCTGCATTATTCGCGTCGGCCAACT 45528 Query 172947 T 172947 | Sbjct 45529 T 45529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597339308315120